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Expand Up @@ -22,7 +22,9 @@ ABACUS 网站访问:

本教程系列旨在帮助新手用户入门了解 ABACUS 的使用。秉着开源软件的理念,本文档是由开源社区的老师同学们贡献所成。如果你也想贡献一份文档,我们十分欢迎,请参考[如何贡献ABACUS使用教程](abacus-contribute.md)

其中标有<a href="" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a> Logo的部分可以直接在[Bohrium Notebook](nb.bohrium.dp.tech)上打开。在Bohrium Notebook上快速学习,见[快速开始 ABACUS|自洽 能带 态密度 结构优化](https://nb.bohrium.dp.tech/detail/4641406377);在Bohrium平台上运行大任务,见[教程](https://bohrium-doc.dp.tech/docs/software/ABACUS/)
本教程中标有<a href="" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a> Logo的部分可以直接在[Bohrium Notebook](https://nb.bohrium.dp.tech)上打开。

在Bohrium Notebook上快速学习,见[快速开始 ABACUS|自洽 能带 态密度 结构优化](https://nb.bohrium.dp.tech/detail/4641406377);在Bohrium平台上运行大任务,见[教程](https://bohrium-doc.dp.tech/docs/software/ABACUS/)

# 二、ABACUS基本操作教程

Expand All @@ -36,33 +38,33 @@ ABACUS 网站访问:
2. 准备赝势:
[模守恒赝势生成方法简介](abacus-upf.md)
3. 数值原子轨道基组生成教程:
1. [数值原子轨道(一):ABACUS 中的数值原子轨道命名和使用方法](https://nb.bohrium.dp.tech/detail/9319634192)<a href="https://nb.bohrium.dp.tech/detail/9319634192" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
2. [数值原子轨道(二):生成给定模守恒赝势的数值原子轨道](https://nb.bohrium.dp.tech/detail/5215642163)<a href="https://nb.bohrium.dp.tech/detail/5215642163" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
3. [数值原子轨道(三):产生高精度数值原子轨道](https://nb.bohrium.dp.tech/detail/8841868194)<a href="https://nb.bohrium.dp.tech/detail/8841868194" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
1. [数值原子轨道(一):ABACUS 中的数值原子轨道命名和使用方法](abacus-nac1.md)<a href="https://nb.bohrium.dp.tech/detail/9319634192" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
2. [数值原子轨道(二):生成给定模守恒赝势的数值原子轨道](abacus-nac2.md)<a href="https://nb.bohrium.dp.tech/detail/5215642163" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
3. [数值原子轨道(三):产生高精度数值原子轨道](abacus-nac3.md)<a href="https://nb.bohrium.dp.tech/detail/8841868194" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
3. Kohn-Sham密度泛函理论
1. [电子自洽迭代](https://nb.bohrium.dp.tech/detail/7417640496)<a href="https://nb.bohrium.dp.tech/detail/7417640496" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
1. 平面波PW(缺)
2. 数值原子轨道LCAO(缺)
2. 带自旋的体系计算:[<mark style="color:red;">ABACUS磁性材料计算使用教程</mark>](https://nb.bohrium.dp.tech/detail/7141761751)<mark style="color:red;"></mark><a href="https://nb.bohrium.dp.tech/detail/7141761751" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
3. \+U计算:[<mark style="color:red;">ABACUS DFT+U使用教程</mark>](https://nb.bohrium.dp.tech/detail/2112617648)<mark style="color:red;"></mark><a href="https://nb.bohrium.dp.tech/detail/2112617648" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
4. 结构优化[ABACUS 使用教程|结构优化](https://nb.bohrium.dp.tech/detail/9119461238)<a href="https://nb.bohrium.dp.tech/detail/9119461238" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
5. 分子动力学:[ABACUS 分子动力学使用教程](https://nb.bohrium.dp.tech/detail/2241262724)<a href="https://nb.bohrium.dp.tech/detail/2241262724" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
4. 结构优化[ABACUS 使用教程|结构优化](https://nb.bohrium.dp.tech/detail/9119461238)<a href="https://nb.bohrium.dp.tech/detail/9119461238" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
5. 分子动力学:[ABACUS 分子动力学使用教程](abacus-md.md)<a href="https://nb.bohrium.dp.tech/detail/2241262724" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
4. DeePKS方法(缺)
5. 隐式溶剂计算等相关功能(缺)
6. 随机波函数密度泛函理论:[ABACUS 随机波函数DFT方法使用教程](https://nb.bohrium.dp.tech/detail/5915692245)<a href="https://nb.bohrium.dp.tech/detail/5915692245" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
7. 无轨道密度泛函理论:[ABACUS 无轨道密度泛函理论方法使用教程](https://nb.bohrium.dp.tech/detail/6416644691)<a href="https://nb.bohrium.dp.tech/detail/6416644691" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
6. 随机波函数密度泛函理论:[ABACUS 随机波函数DFT方法使用教程](abacus-sdft.md)<a href="https://nb.bohrium.dp.tech/detail/5915692245" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
7. 无轨道密度泛函理论:[ABACUS 无轨道密度泛函理论方法使用教程](abacus-ofdft.md)<a href="https://nb.bohrium.dp.tech/detail/6416644691" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
8. 分析结果
1. 能带计算
1. [<mark style="color:red;">如何正确画能带,NSCF读电荷密度</mark>](https://xmywuqhxb0.feishu.cn/docx/K8GRdTst4oXQNoxnQVbcFZTmntb)<mark style="color:red;"></mark>
2. [<mark style="color:red;">用ABACUS-ASE自动产生能带路径</mark>](https://nb.bohrium.dp.tech/detail/1211642609)<mark style="color:red;"></mark><a href="https://nb.bohrium.dp.tech/detail/1211642609" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
2. PDOS计算
1. [<mark style="color:red;">ABACUS里怎样做DOS和PDOS计算</mark>](https://xmywuqhxb0.feishu.cn/docx/ONSldj82VoNGKSxaoDQcoKBtnGh)<mark style="color:red;"></mark>
9. 和其他软件对接
1. [ABACUS+Phonopy 计算声子谱](https://nb.bohrium.dp.tech/detail/8741867512)<a href="https://nb.bohrium.dp.tech/detail/8741867512" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
2. [ABACUS+ShengBTE 计算晶格热导率](https://nb.bohrium.dp.tech/detail/2712467526)<a href="https://nb.bohrium.dp.tech/detail/2712467526" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
3. [ABACUS+DPGEN 使用教程](https://nb.bohrium.dp.tech/detail/6116401077)<a href="https://nb.bohrium.dp.tech/detail/6116401077" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
4. [ABACUS+LibRI 做杂化泛函计算教程](https://nb.bohrium.dp.tech/detail/8041860882)<a href="https://nb.bohrium.dp.tech/detail/8041860882" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
5. [ABACUS+Candela 使用教程](https://nb.bohrium.dp.tech/detail/2912697542)<a href="https://nb.bohrium.dp.tech/detail/2912697542" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
1. [ABACUS+Phonopy 计算声子谱](abacus-phonopy.md)<a href="https://nb.bohrium.dp.tech/detail/8741867512" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
2. [ABACUS+ShengBTE 计算晶格热导率](abacus-shengbte.md)<a href="https://nb.bohrium.dp.tech/detail/2712467526" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
3. [ABACUS+DPGEN 使用教程](abacus-dpgen.md)<a href="https://nb.bohrium.dp.tech/detail/6116401077" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
4. [ABACUS+LibRI 做杂化泛函计算教程](abacus-libri.md)<a href="https://nb.bohrium.dp.tech/detail/8041860882" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
5. [ABACUS+Candela 使用教程](abacus-candela.md)<a href="https://nb.bohrium.dp.tech/detail/2912697542" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"/></a>
6. ABACUS+CINEB教程(缺)
1. [<mark style="color:red;">ABACUS-ASE做NEB计算</mark>](https://dptechnology.feishu.cn/wiki/wikcnzar41sN8ZtGLtm3PLnarSc) <mark style="color:red;"></mark> (简单算例)

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Expand Up @@ -400,6 +400,7 @@ <h1 id="abacuscandela-&#x4F7F;&#x7528;&#x6559;&#x7A0B;"><a name="abacuscandela-&
<p><strong>&#x4F5C;&#x8005;&#xFF1A;&#x9648;&#x6D9B;&#xFF0C;&#x90AE;&#x7BB1;&#xFF1A;[email protected]</strong></p>
<p><strong>&#x5BA1;&#x6838;&#xFF1A;&#x9648;&#x9ED8;&#x6DB5;&#xFF0C;&#x90AE;&#x7BB1;&#xFF1A;[email protected]</strong></p>
<p><strong>&#x6700;&#x540E;&#x66F4;&#x65B0;&#x65F6;&#x95F4;&#xFF1A;2023/08/23</strong></p>
<p><strong>&#x5728;Bohrium Notebook&#x4E0A;&#x5FEB;&#x901F;&#x5B66;&#x4E60;&#xFF1A;</strong><a href="https://nb.bohrium.dp.tech/detail/2912697542" target="_blank"><img src="https://cdn.dp.tech/bohrium/web/static/images/open-in-bohrium.svg" alt="Open In Bohrium"></a></p>
<h1 id="&#x4E00;&#x3001;&#x4ECB;&#x7ECD;"><a name="&#x4E00;&#x3001;&#x4ECB;&#x7ECD;" class="plugin-anchor" href="#&#x4E00;&#x3001;&#x4ECB;&#x7ECD;"><i class="fa fa-link" aria-hidden="true"></i></a>&#x4E00;&#x3001;&#x4ECB;&#x7ECD;</h1>
<p>&#x672C;&#x6559;&#x7A0B;&#x65E8;&#x5728;&#x4ECB;&#x7ECD;&#x91C7;&#x7528; Candela &#x5206;&#x6790; ABACUS&#xFF08;&#x57FA;&#x4E8E; 3.2.4 &#x7248;&#x672C;&#xFF09;&#x5206;&#x5B50;&#x52A8;&#x529B;&#x5B66;&#x8F68;&#x8FF9;&#xFF0C;&#x8BA1;&#x7B97;&#x5F84;&#x5411;&#x5206;&#x5E03;&#x51FD;&#x6570;&#xFF08;Radial Distribution Function&#xFF0C;&#x7B80;&#x79F0; RDF&#xFF09;&#xFF0C;&#x9759;&#x6001;&#x7ED3;&#x6784;&#x56E0;&#x5B50;&#xFF08;Static Structure Factor&#xFF0C;&#x7B80;&#x79F0; SSF&#xFF09;&#xFF0C;&#x79BB;&#x5B50;-&#x79BB;&#x5B50;&#x52A8;&#x6001;&#x7ED3;&#x6784;&#x56E0;&#x5B50;&#xFF08;Ion-ion Dynamic Structure Factor&#xFF0C;&#x7B80;&#x79F0; DSF&#xFF09;&#x4EE5;&#x53CA;&#x5747;&#x65B9;&#x5DEE;&#x4F4D;&#x79FB;&#xFF08;Mean Square Displacement&#xFF0C;&#x7B80;&#x79F0; MSD&#xFF09;&#x6D41;&#x7A0B;&#x3002;</p>
<p>&#x4E0A;&#x8FF0;&#x6027;&#x8D28;&#x7684;&#x5177;&#x4F53;&#x63CF;&#x8FF0;&#x53EF;&#x4EE5;&#x53C2;&#x8003;&#xFF1A;<a href="https://iopscience.iop.org/article/10.1088/1361-648X/ab5890" target="_blank">Qianrui Liu <em>et al</em> 2020 <em>J. Phys.: Condens. Matter</em> <strong>32</strong> 144002</a>&#xFF0C;&#x5F84;&#x5411;&#x5206;&#x5E03;&#x51FD;&#x6570;&#xFF08;RDF&#xFF09;&#x89C1;&#x6587;&#x4E2D;&#x516C;&#x5F0F;&#xFF08;12&#xFF09;&#xFF0C;&#x9759;&#x6001;&#x7ED3;&#x6784;&#x56E0;&#x5B50;&#xFF08;SSF&#xFF09;&#x89C1;&#x516C;&#x5F0F;&#xFF08;13&#xFF09;&#xFF0C;&#x79BB;&#x5B50;-&#x79BB;&#x5B50;&#x52A8;&#x6001;&#x7ED3;&#x6784;&#x56E0;&#x5B50;&#xFF08;DSF&#xFF09;&#x89C1;&#x516C;&#x5F0F;&#xFF08;15&#xFF0C;16&#xFF0C;17&#xFF09;&#x4EE5;&#x53CA;&#x5747;&#x65B9;&#x5DEE;&#x4F4D;&#x79FB;&#xFF08;MSD&#xFF09;&#x89C1;&#x516C;&#x5F0F;&#xFF08;18&#xFF09;&#x3002;</p>
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