IsLabelledNewick="true" or "false" ? #172

LinguaPhylo · Nov 22, 2024 · 1f84c59 · 1f84c59
1 parent 8176511
commit 1f84c59
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/lphybeast/src/main/java/lphybeast/tobeast/values/TimeTreeToBEAST.java b/lphybeast/src/main/java/lphybeast/tobeast/values/TimeTreeToBEAST.java
@@ -30,7 +30,10 @@ public TreeParser valueToBEAST(Value<TimeTree> timeTreeValue, BEASTContext conte
 
         TreeParser tree = new TreeParser();
         tree.setInputValue("newick", timeTree.toNewick(false));
+        // TODO seems IsLabelledNewick="true" causes the trouble when cares internal node index
         tree.setInputValue("IsLabelledNewick", true);
+        // IsLabelledNewick="true" Is the Newick tree labelled (alternatively contains node numbers).
+//        tree.setInputValue("IsLabelledNewick", false);
 
         TaxonSet taxa = new TaxonSet();
         List<Taxon> taxonList = context.createTaxonList(getTaxaNames(timeTree));