Separate prediction functionalities from inference

LiQian-XC · Jul 30, 2023 · ffb3621 · ffb3621
1 parent d8b9f81
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diff --git a/docs/source/api_predict.rst b/docs/source/api_predict.rst
@@ -0,0 +1,12 @@
+Prediction
+==================================
+
+.. autosummary::
+   :toctree: generated/
+   :nosignatures:
+
+   sctour.predict.load_model
+   sctour.predict.predict_time
+   sctour.predict.predict_latentsp
+   sctour.predict.predict_vector_field
+   sctour.predict.predict_ltsp_from_time
diff --git a/docs/source/api_reverse_time.rst b/docs/source/api_reverse_time.rst
@@ -0,0 +1,4 @@
+Post-inference adjustment
+==================================
+
+.. autofunction:: sctour.train.reverse_time
diff --git a/docs/source/api_train.rst b/docs/source/api_train.rst
@@ -1,4 +1,4 @@
-Model training and prediction
+Model training
 ==================================
 
 .. autosummary::

diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -49,7 +49,9 @@ Qian Li, scTour: a deep learning architecture for robust inference and accurate
    :hidden:
 
    api_train
+   api_predict
    api_vf
+   api_reverse_time
 
 .. |PyPI| image:: https://img.shields.io/pypi/v/sctour.svg
    :target: https://pypi.org/project/sctour

diff --git a/docs/source/notebook/scTour_inference_PostInference_adjustment.ipynb b/docs/source/notebook/scTour_inference_PostInference_adjustment.ipynb
diff --git a/docs/source/notebook/scTour_inference_basic.ipynb b/docs/source/notebook/scTour_inference_basic.ipynb
diff --git a/docs/source/notebook/scTour_prediction.ipynb b/docs/source/notebook/scTour_prediction.ipynb
diff --git a/sctour/__init__.py b/sctour/__init__.py
@@ -1,3 +1,4 @@
 from . import train
+from . import predict
 from . import vector_field as vf
-__version__ = '0.1.3'
+__version__ = '1.0.0'