Adding HDF5 compression plugins to superbuild

scripts/superbuild/CMakeLists.txt

@@ -77,6 +77,9 @@ lbann_sb_add_packages(
   Aluminum     # Hydrogen, DiHydrogen
   Catch2       # Hydrogen, DiHydrogen
   HDF5         # Conduit
+  ZFP          # LBANN
+  H5Z-ZFP      # LBANN
+  HDF5_PLUGINS # LBANN
   JPEG-TURBO   # OpenCV
   OpenBLAS     # Hydrogen
   spdlog       # DiHydrogen, LBANN
@@ -112,7 +115,11 @@ foreach (pkg ${LBANN_SB_BUILD_PKGS})
 endforeach ()
 
 # Print a helpful(?) message
-set(LBANN_SB_SUGG_CMAKE_PREFIX_PATH_TMP "\$\{CMAKE_PREFIX_PATH\}")
+set(LBANN_SB_SUGG_CMAKE_PREFIX_PATH_TMP "${CMAKE_PREFIX_PATH}:\$\{CMAKE_PREFIX_PATH\}")
+message("BVE I think that there is a prefix path ${CMAKE_PREFIX_PATH}")
+message("BVE I think that there is a foo ${FOO}")
+message("BVE I think that there is a suggesed prefix path ${LBANN_SB_SUGG_CMAKE_PREFIX_PATH_TMP}")
+#set(LBANN_SB_SUGG_CMAKE_PREFIX_PATH_TMP "\$\{CMAKE_PREFIX_PATH\}")
 message("\n-----------------------------------------------------------------\n")
 message("LBANN SuperBuild will build the following packages:\n")
 foreach (pkg ${LBANN_SB_BUILD_PKGS})
@@ -140,6 +147,11 @@ message("\n-----------------------------------------------------------------\n")
 file(WRITE "${CMAKE_BINARY_DIR}/lbann_sb_suggested_cmake_prefix_path.sh"
   "export CMAKE_PREFIX_PATH=${LBANN_SB_SUGG_CMAKE_PREFIX_PATH}\n")
 
+if (LBANN_SB_BUILD_H5Z-ZFP)
+file(APPEND "${CMAKE_BINARY_DIR}/lbann_sb_suggested_cmake_prefix_path.sh"
+  "\nexport HDF5_PLUGIN_PATH=${H5Z-ZFP_DIR}/plugin\n")
+endif (LBANN_SB_BUILD_H5Z-ZFP)
+
 # Add a custom target for bundling all things up
 if (UNIX)
   find_program(__FIND_EXE find)

scripts/superbuild/examples/cuda-distconv.sh

@@ -24,6 +24,11 @@
 ## permissions and limitations under the license.
 ################################################################################
 
+#source $LMOD_PKG/init/zsh
+#ml cuda/11.8 cmake/3.23 ninja gcc/11
+ml load cuda/12.2.2 cmake/3.23.1 gcc/11.2.1 spectrum-mpi/rolling-release python/3.8.2
+export LIBRARY_PATH=$LD_LIBRARY_PATH
+
 # Set to ON (or any CMake truthy value) to build all of the
 # dependencies of the LBANN stack
 BUILD_EXTERNAL_TPLS=ON
@@ -53,18 +58,21 @@ LBANN_SRC_DIR=$(git rev-parse --show-toplevel)
 SUPERBUILD_SRC_DIR=${LBANN_SRC_DIR}/scripts/superbuild
 
 # Set to the preferred install directory
-INSTALL_PREFIX=${PWD}/install-cuda-distconv
+#INSTALL_PREFIX=${PWD}/install-cuda-distconv
+INSTALL_PREFIX=/p/vast1/lbann/stable_dependencies/lassen/gcc-11.2.1/cuda-12.2.2/spectrum-mpi-rolling-release
 
 # Set to the preferred build directory
 BUILD_DIR=${TMPDIR}/lbann-superbuild
 
+#    -G Ninja \
 cmake \
-    -G Ninja \
+    -G "Unix Makefiles" \
     -S ${SUPERBUILD_SRC_DIR} \
     -B ${BUILD_DIR} \
     \
     -D CMAKE_BUILD_TYPE=Release \
     -D CMAKE_INSTALL_PREFIX=${INSTALL_PREFIX} \
+    -D BUILD_SHARED_LIBS=ON \
     \
     -D CMAKE_C_COMPILER=$(command -v gcc) \
     -D CMAKE_CXX_COMPILER=$(command -v g++) \
@@ -74,7 +82,7 @@ cmake \
     \
     -D CMAKE_CXX_STANDARD=17 \
     -D CMAKE_CUDA_STANDARD=17 \
-    -D CMAKE_CUDA_ARCHITECTURES=${GPU_ARCH} \
+    -D CMAKE_CUDA_ARCHITECTURES=${CUDA_GPU_ARCH} \
     \
     -D CMAKE_POSITION_INDEPENDENT_CODE=ON \
     \
@@ -107,12 +115,13 @@ cmake \
     -D LBANN_SB_BUILD_Aluminum=${BUILD_LBANN_STACK} \
     -D LBANN_SB_Aluminum_CXX_FLAGS="${EXTRA_CXX_FLAGS}" \
     -D LBANN_SB_Aluminum_CUDA_FLAGS="${EXTRA_CUDA_FLAGS}" \
-    -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_CALIPER=ON \
+    -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_CALIPER=OFF \
     -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_NCCL=ON \
     -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_HOST_TRANSFER=ON \
     -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_TESTS=OFF \
     -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_BENCHMARKS=OFF \
     -D LBANN_SB_FWD_Aluminum_ALUMINUM_ENABLE_THREAD_MULTIPLE=OFF \
+    -D LBANN_SB_FWD_Aluminum_NCCL_DIR=${INSTALL_PREFIX}/nccl_2.20.3-1+cuda12.2_ppc64le \
     \
     -D LBANN_SB_BUILD_Hydrogen=${BUILD_LBANN_STACK} \
     -D LBANN_SB_Hydrogen_CXX_FLAGS="${EXTRA_CXX_FLAGS}" \
@@ -122,12 +131,15 @@ cmake \
     -D LBANN_SB_FWD_Hydrogen_Hydrogen_ENABLE_HALF=OFF \
     -D LBANN_SB_FWD_Hydrogen_Hydrogen_ENABLE_TESTING=ON \
     -D LBANN_SB_FWD_Hydrogen_Hydrogen_ENABLE_UNIT_TESTS=OFF \
+    -D LBANN_SB_FWD_Hydrogen_NCCL_DIR=${INSTALL_PREFIX}/nccl_2.20.3-1+cuda12.2_ppc64le \
     \
     -D LBANN_SB_BUILD_DiHydrogen=${BUILD_LBANN_STACK} \
     -D LBANN_SB_DiHydrogen_CXX_FLAGS="${EXTRA_CXX_FLAGS}" \
     -D LBANN_SB_DiHydrogen_CUDA_FLAGS="${EXTRA_CUDA_FLAGS}" \
     -D LBANN_SB_FWD_DiHydrogen_BLA_VENDOR="Generic" \
     -D LBANN_SB_FWD_DiHydrogen_H2_ENABLE_DISTCONV_LEGACY=${BUILD_WITH_DISTCONV} \
+    -D LBANN_SB_FWD_DiHydrogen_NCCL_DIR=${INSTALL_PREFIX}/nccl_2.20.3-1+cuda12.2_ppc64le \
+    -D LBANN_SB_FWD_DiHydrogen_CUDNN_DIR=${INSTALL_PREFIX}/cudnn-linux-ppc64le-8.9.7.29_cuda12-archive \
     \
     -D LBANN_SB_BUILD_LBANN=${BUILD_LBANN_STACK} \
     -D LBANN_SB_LBANN_SOURCE_DIR=${LBANN_SRC_DIR} \
@@ -137,7 +149,9 @@ cmake \
     -D LBANN_SB_FWD_LBANN_BLA_VENDOR="Generic" \
     -D LBANN_SB_FWD_LBANN_CMAKE_EXPORT_COMPILE_COMMANDS=ON \
     -D LBANN_SB_FWD_LBANN_LBANN_DATATYPE=float \
-    -D LBANN_SB_FWD_LBANN_LBANN_WITH_CALIPER=ON \
+    -D LBANN_SB_FWD_LBANN_LBANN_WITH_CALIPER=OFF \
     -D LBANN_SB_FWD_LBANN_LBANN_WITH_DISTCONV=${BUILD_WITH_DISTCONV} \
     -D LBANN_SB_FWD_LBANN_LBANN_WITH_TBINF=OFF \
-    -D LBANN_SB_FWD_LBANN_LBANN_WITH_UNIT_TESTING=ON
+    -D LBANN_SB_FWD_LBANN_LBANN_WITH_UNIT_TESTING=ON \
+    -D LBANN_SB_FWD_LBANN_NCCL_DIR=${INSTALL_PREFIX}/nccl_2.20.3-1+cuda12.2_ppc64le \
+    -D LBANN_SB_FWD_LBANN_CUDNN_DIR=${INSTALL_PREFIX}/cudnn-linux-ppc64le-8.9.7.29_cuda12-archive

scripts/superbuild/h5z-zfp/CMakeLists.txt

@@ -0,0 +1,42 @@
+################################################################################
+## Copyright (c) 2014-2024, Lawrence Livermore National Security, LLC.
+## Produced at the Lawrence Livermore National Laboratory.
+## Written by the LBANN Research Team (B. Van Essen, et al.) listed in
+## the CONTRIBUTORS file. <[email protected]>
+##
+## LLNL-CODE-697807.
+## All rights reserved.
+##
+## This file is part of LBANN: Livermore Big Artificial Neural Network
+## Toolkit. For details, see http://software.llnl.gov/LBANN or
+## https://github.com/LLNL/LBANN.
+##
+## Licensed under the Apache License, Version 2.0 (the "Licensee"); you
+## may not use this file except in compliance with the License.  You may
+## obtain a copy of the License at:
+##
+## http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+## implied. See the License for the specific language governing
+## permissions and limitations under the license.
+################################################################################
+
+# Conduit is "cute" about finding HDF5. It's not a CMake option() --
+# you opt in by setting HDF5_DIR explicitly. So let's do that.
+# if (TARGET HDF5 AND NOT LBANN_SB_FWD_ZFP_HDF5_DIR)
+#   set(LBANN_SB_FWD_ZFP_HDF5_DIR ${HDF5_DIR})
+# endif ()
+
+lbann_sb_add_cmake_extern_pkg(
+  NAME H5Z-ZFP
+  LANGUAGES C CXX ${lbann_sb_ftn_lang}
+  GITHUB_URL llnl/h5z-zfp.git
+  GIT_TAG "master"
+  DEPENDS_ON HDF5 ZFP
+)
+
+set(H5Z-ZFP_DIR ${LBANN_SB_H5Z-ZFP_PREFIX}
+  CACHE INTERNAL "The install prefix of H5Z-ZFP.")

scripts/superbuild/hdf5/CMakeLists.txt

@@ -24,8 +24,8 @@
 ## permissions and limitations under the license.
 ################################################################################
 # These defaults are set so as to be most amenable to LBANN(/Conduit).
-set(LBANN_SB_FWD_HDF5_DEFAULT_API_VERSION "v18"
-  CACHE BOOL "Default API version for HDF5")
+set(LBANN_SB_FWD_HDF5_DEFAULT_API_VERSION "v112"
+  CACHE STRING "Default API version for HDF5")
 
 option(LBANN_SB_FWD_HDF5_BUILD_TESTING
   "Build HDF5 tests."
@@ -37,24 +37,30 @@ option(LBANN_SB_FWD_HDF5_HDF5_BUILD_EXAMPLES
 option(LBANN_SB_FWD_HDF5_HDF5_ENABLE_PARALLEL
   "Build HDF5 with parallel (MPI) support." ON)
 
-option(LBANN_SB_FWD_HDF5_HDF5_USE_16_API_DEFAULT
-  "Use 1.6 API by default"
-  OFF)
-option(LBANN_SB_FWD_HDF5_HDF5_USE_18_API_DEFAULT
-  "Use 1.8 API by default"
-  ON)
-option(LBANN_SB_FWD_HDF5_HDF5_USE_110_API_DEFAULT
-  "Use 1.10 API by default"
-  OFF)
-option(LBANN_SB_FWD_HDF5_HDF5_USE_112_API_DEFAULT
-  "Use 1.12 API by default"
-  OFF)
+# option(LBANN_SB_FWD_HDF5_HDF5_USE_16_API_DEFAULT
+#   "Use 1.6 API by default"
+#   OFF)
+# option(LBANN_SB_FWD_HDF5_HDF5_USE_18_API_DEFAULT
+#   "Use 1.8 API by default"
+#   OFF)
+# option(LBANN_SB_FWD_HDF5_HDF5_USE_110_API_DEFAULT
+#   "Use 1.10 API by default"
+#   OFF)
+# option(LBANN_SB_FWD_HDF5_HDF5_USE_112_API_DEFAULT
+#   "Use 1.12 API by default"
+#   ON)
 option(LBANN_SB_FWD_HDF5_HDF5_BUILD_FORTRAN
   "Build HDF5 with fortran support"
   OFF)
 option(LBANN_SB_FWD_HDF5_HDF5_GENERATE_HEADERS
   "See HDF5 docs."
   ON)
+option(LBANN_SB_FWD_HDF5_ONLY_SHARED_LIBS
+  "Only Build Shared Libraries."
+  ON)
+# option(LBANN_SB_FWD_HDF5_DEFAULT_API_VERSION
+#   "Only Build Shared Libraries."
+#   v112)
 
 # At present, this is required for LBANN/JAG use.
 option(LBANN_SB_FWD_HDF5_HDF5_ENABLE_Z_LIB_SUPPORT
@@ -75,7 +81,7 @@ lbann_sb_add_cmake_extern_pkg(
   NAME HDF5
   LANGUAGES C CXX ${MAYBE_HDF5_FORTRAN}
   GITHUB_URL HDFGroup/hdf5
-  GIT_TAG "hdf5-1_10_9")
+  GIT_TAG "hdf5-1_12_3")
 
 set(HDF5_DIR ${LBANN_SB_HDF5_PREFIX}
   CACHE INTERNAL "The install prefix of HDF5.")