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Kortemme-Lab

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  1. flex_ddG_tutorial flex_ddG_tutorial Public

    Python 94 29

  2. ddg ddg Public

    A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.

    Python 18 12

  3. match_ligand_binding_sites match_ligand_binding_sites Public

    Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.

    Python 11 5

  4. protein_feature_analysis protein_feature_analysis Public

    ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.

    Python 8 5

  5. coupled_moves-tutorial coupled_moves-tutorial Public

    Python 7 1

  6. loop_helix_loop_reshaping loop_helix_loop_reshaping Public

    Reshape a part of the protein into a loop-helix-loop unit

    Python 7 2

Repositories

Showing 10 of 29 repositories
  • local_protein_sequence_design Public

    Design a local part of a protein

    Kortemme-Lab/local_protein_sequence_design’s past year of commit activity
    Python 7 MIT 3 0 0 Updated Jan 12, 2023
  • flex_ddG_analysis Public
    Kortemme-Lab/flex_ddG_analysis’s past year of commit activity
    Python 0 3 0 0 Updated Aug 17, 2022
  • flex_ddG_tutorial Public
    Kortemme-Lab/flex_ddG_tutorial’s past year of commit activity
    Python 94 MIT 29 11 0 Updated Aug 17, 2022
  • klab Public

    Kortemme Lab tools repository

    Kortemme-Lab/klab’s past year of commit activity
    Python 3 MIT 0 2 0 Updated Jul 25, 2022
  • running_alphafold Public
    Kortemme-Lab/running_alphafold’s past year of commit activity
    Python 0 0 0 0 Updated Oct 6, 2021
  • wiki Public
    Kortemme-Lab/wiki’s past year of commit activity
    0 0 0 0 Updated Aug 26, 2021
  • pull_into_place Public

    A rosetta pipeline to position important protein sidechains with sub-angstrom accuracy.

    Kortemme-Lab/pull_into_place’s past year of commit activity
    Python 5 MIT 2 5 0 Updated Jul 16, 2021
  • protein_design_course_2021 Public
    Kortemme-Lab/protein_design_course_2021’s past year of commit activity
    Jupyter Notebook 4 MIT 1 0 0 Updated Jun 11, 2021
  • protein_design_course_files Public
    Kortemme-Lab/protein_design_course_files’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Mar 31, 2021
  • match_ligand_binding_sites Public

    Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.

    Kortemme-Lab/match_ligand_binding_sites’s past year of commit activity
    Python 11 5 1 0 Updated Dec 29, 2020
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