refactor: impl ReferenceSerialization

[KKould]

What problem does this PR solve?

ReferenceSerialization is used to unify meta-information such as ColumnRef to avoid possible inconsistencies caused by direct serialization after deserialization.

Code changes

• Has Rust code change
• Has CI related scripts change

Check List

Tests

• Unit test
• Integration test
• Manual test (add detailed scripts or steps below)
• No code

Side effects

• Performance regression: Consumes more CPU
• Performance regression: Consumes more Memory
• Breaking backward compatibility

Note for reviewer