v1.4.4a

Kinggerm · Dec 2, 2018 · 370eadd · 370eadd
1 parent 75f3aa2
commit 370eadd
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Showing 4 changed files with 151 additions and 127 deletions.
diff --git a/Library/assembly_parser.py b/Library/assembly_parser.py
@@ -1456,7 +1456,7 @@ def log_target_res(final_res_combinations_inside):
                                     if temp_graph:
                                         new_assembly.write_to_gfa(temp_graph)
                                         new_assembly.write_out_tags([mode], temp_graph[:-5] + "csv")
-                                    raise Exception("Multiple isolated" + mode + " components detected! "
+                                    raise Exception("Multiple isolated " + mode + " components detected! "
                                                     "Broken or contamination?")
                                 for j, w in enumerate(cluster_weights):
                                     if w == second:

diff --git a/Library/pipe_control_func.py b/Library/pipe_control_func.py
@@ -58,10 +58,10 @@ def timed_log(log, output_base, prefix):
     return log_timed
 
 
-def set_time_limit(num):
+def set_time_limit(num, flag_str="'--time-limit'"):
     def wrap(func):
         def handle(sig_num, interrupted_stack_frame):
-            raise RuntimeError("\n\nIncrease '--time-limit' to meet the specific need of data!")
+            raise RuntimeError("\n\nIncrease " + flag_str + " to meet the specific need of data!")
 
         def func_modified(*args, **kwargs):
             signal.signal(signal.SIGALRM, handle)

diff --git a/VERSIONS.py b/VERSIONS.py
@@ -6,6 +6,11 @@ def get_versions():
 
 
 versions = [
+    {"number": "1.4.4a",
+     "features": [
+         "time limit works only for disentangling graph as a circular genome",
+         "more informative log info for disentangling",
+     ]},
     {"number": "1.4.4",
      "features": [
          "1.get_organelle_reads.py: fix a bug with --continue & --prefix when LogInfo() added; ",