Update phabox2.py

KennthShang · Oct 30, 2024 · 2668625 · 2668625
1 parent c88a4d4
commit 2668625
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/src/phabox2/phabox2.py b/src/phabox2/phabox2.py
@@ -364,12 +364,12 @@ def main():
     logger.info(f"PhaBOX2 is running with: {inputs.threads} threads!")
     if inputs.task == "end_to_end":
         phamer.run(inputs)
-        phagcn.run(inputs)
-        cherry.run(inputs)
-        phatyp.run(inputs)
         logger.info(f"PhaMer finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}")
+        phagcn.run(inputs)
         logger.info(f"PhaGCN finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}")
+        cherry.run(inputs)
         logger.info(f"Cherry finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}")
+        phatyp.run(inputs)
         logger.info(f"PhaTYP finished! please check the results in {os.path.join(inputs.outpth, 'final_prediction')}")
         df1 = pd.read_csv(os.path.join(inputs.outpth, 'final_prediction', 'phamer_prediction.tsv'), sep='\t')
         df2 = pd.read_csv(os.path.join(inputs.outpth, 'final_prediction', 'phagcn_prediction.tsv'), sep='\t')