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liux4283 authored Jan 14, 2024
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9 changes: 5 additions & 4 deletions README.Rmd
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[![CRAN status](https://www.r-pkg.org/badges/version/SmCCNet)](https://cran.r-project.org/web/packages/SmCCNet/index.html)
<!-- badges: end -->

**Note:** if you use SmCCNet in published research, please cite:

> Liu, W., Vu, T., Konigsberg, I. R., Pratte, K. A., Zhuang, Y., & Kechris, K. J. (2023). SmCCNet 2.0: an Upgraded R package for Multi-omics Network Inference. bioRxiv, 2023-11.
> Shi, W. J., Zhuang, Y., Russell, P. H., Hobbs, B. D., Parker, M. M., Castaldi, P. J., ... & Kechris, K. (2019). Unsupervised discovery of phenotype-specific multi-omics networks. Bioinformatics, 35(21), 4336-4343.
## Overview

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# SmCCNet Workflow

**Note:** if you use SmCCNet in published research, please cite:

> Liu, W., Vu, T., Konigsberg, I. R., Pratte, K. A., Zhuang, Y., & Kechris, K. J. (2023). SmCCNet 2.0: an Upgraded R package for Multi-omics Network Inference. bioRxiv, 2023-11.

> Shi, W. J., Zhuang, Y., Russell, P. H., Hobbs, B. D., Parker, M. M., Castaldi, P. J., ... & Kechris, K. (2019). Unsupervised discovery of phenotype-specific multi-omics networks. Bioinformatics, 35(21), 4336-4343.


## General Workflow
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22 changes: 11 additions & 11 deletions README.md
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status](https://www.r-pkg.org/badges/version/SmCCNet)](https://cran.r-project.org/web/packages/SmCCNet/index.html)
<!-- badges: end -->

**Note:** if you use SmCCNet in published research, please cite:

> Liu, W., Vu, T., Konigsberg, I. R., Pratte, K. A., Zhuang, Y., &
> Kechris, K. J. (2023). SmCCNet 2.0: an Upgraded R package for
> Multi-omics Network Inference. bioRxiv, 2023-11.
> Shi, W. J., Zhuang, Y., Russell, P. H., Hobbs, B. D., Parker, M. M.,
> Castaldi, P. J., … & Kechris, K. (2019). Unsupervised discovery of
> phenotype-specific multi-omics networks. Bioinformatics, 35(21),
> 4336-4343.
## Overview

SmCCNet is a framework that adeptly integrates single or multiple omics
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# SmCCNet Workflow

**Note:** if you use SmCCNet in published research, please cite:

> Liu, W., Vu, T., Konigsberg, I. R., Pratte, K. A., Zhuang, Y., &
> Kechris, K. J. (2023). SmCCNet 2.0: an Upgraded R package for
> Multi-omics Network Inference. bioRxiv, 2023-11.
> Shi, W. J., Zhuang, Y., Russell, P. H., Hobbs, B. D., Parker, M. M.,
> Castaldi, P. J., … & Kechris, K. (2019). Unsupervised discovery of
> phenotype-specific multi-omics networks. Bioinformatics, 35(21),
> 4336-4343.
## General Workflow

<img src="vignettes/figures/workflow.png" width="100%" />
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