Add VTU to XDMF mesh conversion using meshio #12
Workflow file for this run
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| # Borrowed from VaMPy | |
| # Original Workflow File: https://github.com/KVSlab/VaMPy/blob/master/.github/workflows/check_and_test_package.yml | |
| # Description: Check and test the code of FSIPy | |
| name: CI | |
| on: | |
| push: | |
| # The CI is executed on every push on every branch | |
| branches: | |
| - master | |
| pull_request: | |
| # The CI is executed on every pull request to the main branch | |
| branches: | |
| - master | |
| schedule: | |
| # The CI is executed every day at 4am | |
| - cron: "0 4 * * *" | |
| env: | |
| CACHE_NUMBER: 0 # Increase to reset cache | |
| jobs: | |
| check-code: | |
| name: Check code | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Upgrade pip and setuptools | |
| run: python3 -m pip install pip setuptools --upgrade | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Install types-paramiko | |
| run: python3 -m pip install types-paramiko | |
| - name: Install FSIPy | |
| run: python3 -m pip install .[test] | |
| - name: Check code with Flake8 | |
| run: python3 -m flake8 | |
| - name: Check code with mypy | |
| run: python3 -m mypy | |
| test-code: | |
| needs: check-code | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/fsipy | |
| - os: macos-latest | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/fsipy | |
| name: Test FSIPy on ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Upgrade pip and setuptools | |
| run: | | |
| python3 -m pip install pip setuptools --upgrade | |
| # See: https://github.com/marketplace/actions/setup-miniconda | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: conda-forge | |
| activate-environment: fsipy | |
| use-mamba: true | |
| - name: Set cache date | |
| run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ matrix.prefix }} | |
| key: ${{ matrix.label }}-conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n fsipy -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install FSIPy | |
| run: python3 -m pip install .[test] | |
| - name: Run tests | |
| run: python3 -m pytest tests | |
| # FIXME: Uncomment these lines later when we have decided on a package name | |
| #- name: Upload coverage report to codecov | |
| # if: matrix.os == 'ubuntu-latest' | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| # files: ./coverage.xml | |
| # fail_ci_if_error: false | |
| # verbose: true | |
| # Original workflow authored by Henrik Kjeldsberg | |
| # Source Repository: https://github.com/KVSlab/VaMPy/ |