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Add '-l' option to just provide sample names instead of bam files #1

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@winni2k winni2k commented May 7, 2020

I am creating the pileup from read groups in a single file using streaming_pileupy, but this means that I don't have a list of bam files from which to pull the sample names. Creating these files would be expensive. Instead I have list of sample names that I use with streaming_pileupy as well.

Here is an addition to allow sample naming from a simple sample list.

@winni2k winni2k force-pushed the master branch 4 times, most recently from 4e797cb to ed07847 Compare May 8, 2020 11:40
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