Merge pull request #95 from Julie-Fabre/bleeding_edge

Bleeding edge
Julie-Fabre · Jun 5, 2024 · daf2701 · daf2701
2 parents 20774d4 + 85ffcce
commit daf2701
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diff --git a/qualityMetrics/bc_updateSpatialDecaySlope.m b/qualityMetrics/bc_updateSpatialDecaySlope.m
@@ -0,0 +1,22 @@
+function bc_updateSpatialDecaySlope(kilosortSavePath, qMetricSavePath)
+
+% load in quality metrics 
+[~, qMetric] = bc_loadSavedMetrics(qMetricSavePath); 
+
+% load in relevant kilosort files 
+[~, spikeTemplates, templateWaveforms, ~, ~, ...
+    ~, ~] = bc_loadEphysData(kilosortSavePath);
+
+uniqueTemplates = unique(spikeTemplates);
+
+% update spatial decay value
+for iUnit = 1:size(uniqueTemplates,1)
+
+    thisUnit = uniqueTemplates(iUnit);
+
+    qMetric.spatialDecaySlope(iUnit) = qMetric.spatialDecaySlope(iUnit)./max(max(templateWaveforms(thisUnit, :,:)));
+end
+
+% save new metrics 
+parquetwrite([fullfile(qMetricSavePath, 'templates._bc_qMetrics.parquet')], qMetric)
+end
diff --git a/qualityMetrics/helpers/bc_getSpatialDecay.asv b/qualityMetrics/helpers/bc_getSpatialDecay.asv