Skip to content

Commit

Permalink
Merge pull request #39 from Julie-Fabre/bleeding_edge
Browse files Browse the repository at this point in the history 
update GUI for non-axonal units
  • Loading branch information
@Julie-Fabre
Julie-Fabre authored Nov 24, 2023
2 parents cbcfd2d + 79d463a commit 9b6917b
Showing 1 changed file with 29 additions and 10 deletions.
39 changes: 29 additions & 10 deletions visualizationTools/bc_unitQualityGUI.m
View file
Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,12 @@
uniqueTemps = unique(ephysData.spike_templates);
goodUnit_idx = find(unitType == 1);
multiUnit_idx = find(unitType == 2);
noiseUnit_idx = find(unitType == 0 | unitType == 3); % noise or non-somatic
noiseUnit_idx = find(unitType == 0); % noise
if param.splitGoodAndMua_NonSomatic
nonSomaUnit_idx = find(unitType == 3 | unitType == 4);
else
nonSomaUnit_idx = find(unitType == 3);
end

%% plot initial conditions
iChunk = 1;
Expand All @@ -50,6 +55,10 @@ function KeyPressCb(~, evnt)
iCluster = noiseUnit_idx(find(noiseUnit_idx > iCluster, 1, 'first'));
updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, iCluster, qMetric, forGUI, param, ...
probeLocation, unitType, uniqueTemps, iChunk, plotRaw);
elseif strcmpi(evnt.Key, 'a') %toggle to next noise/non-somatic unit
iCluster = nonSomaUnit_idx(find(nonSomaUnit_idx > iCluster, 1, 'first'));
updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, iCluster, qMetric, forGUI, param, ...
probeLocation, unitType, uniqueTemps, iChunk, plotRaw);
elseif strcmpi(evnt.Key, 'leftarrow')
iCluster = iCluster - 1;
updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, iCluster, qMetric, forGUI, param, ...
Expand Down Expand Up @@ -293,17 +302,26 @@ function updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, i
guiData = guidata(unitQualityGuiHandle);
thisUnit = uniqueTemps(iCluster);
colorsGdBad = [1, 0, 0; 0, 0.5, 0];

colorsSomatic = [0.25,0.41,0.88; 0, 0.5, 0];
%% main title
if unitType(iCluster) == 1
set(guiData.mainTitle, 'String', ['Unit ID #', num2str(thisUnit), ...
' (phy ID #: ' num2str(thisUnit-1) '; qMetric row #: ' num2str(iCluster) '), single unit'], 'Color', [0, .5, 0]);
elseif unitType(iCluster) == 0 || unitType(iCluster) == 3
elseif unitType(iCluster) == 0
set(guiData.mainTitle, 'String', ['Unit ID #', num2str(thisUnit), ...
' (phy ID #: ' num2str(thisUnit-1) '; qMetric row #: ' num2str(iCluster) '), noise/non-somatic'], 'Color', [1, 0, 0]);
elseif unitType(iCluster) == 2
set(guiData.mainTitle, 'String', ['Unit ID #', num2str(thisUnit), ...
' (phy ID #: ' num2str(thisUnit-1) '; qMetric row #: ' num2str(iCluster) '), multi-unit'], 'Color', [1, 0, 1]);
elseif unitType(iCluster) == 3 && param.splitGoodAndMua_NonSomatic
set(guiData.mainTitle, 'String', ['Unit ID #', num2str(thisUnit), ...
' (phy ID #: ' num2str(thisUnit-1) '; qMetric row #: ' num2str(iCluster) '), non-somatic single unit'], 'Color', [0.25,0.41,0.88]);
elseif unitType(iCluster) == 3
set(guiData.mainTitle, 'String', ['Unit ID #', num2str(thisUnit), ...
' (phy ID #: ' num2str(thisUnit-1) '; qMetric row #: ' num2str(iCluster) '), non-somatic unit'], 'Color', [0.25,0.41,0.88]);
elseif unitType(iCluster) == 4
set(guiData.mainTitle, 'String', ['Unit ID #', num2str(thisUnit), ...
' (phy ID #: ' num2str(thisUnit-1) '; qMetric row #: ' num2str(iCluster) '), non-somatic multi unit'], 'Color', [ 0.54, 0, 0.54]);
end

%% plot 1: update curr unit location
Expand Down Expand Up @@ -359,10 +377,11 @@ function updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, i
'\\color[rgb]{%s}is somatic, \\color[rgb]{%s}spatial decay, \\color[rgb]{%s}baseline flatness, ' newline, ...
'\\color[rgb]{%s}waveform duration}'];

set(guiData.tempTitle, 'String', sprintf(tempWvTitleText, num2str(colorsGdBad(double(qMetric.nPeaks(iCluster) <= param.maxNPeaks || qMetric.nTroughs(iCluster) <= param.maxNTroughs)+1, :)), ...
num2str(colorsGdBad(double(qMetric.isSomatic(iCluster) == 1)+1, :)), ...
num2str(colorsGdBad(double(qMetric.spatialDecaySlope(iCluster) < param.minSpatialDecaySlope)+1, :)),...
num2str(colorsGdBad(double(qMetric.waveformBaselineFlatness(iCluster) < param.maxWvBaselineFraction)+1, :)),...
set(guiData.tempTitle, 'String', sprintf(tempWvTitleText, ...
num2str(colorsGdBad(double(qMetric.nPeaks(iCluster) <= param.maxNPeaks || qMetric.nTroughs(iCluster) <= param.maxNTroughs)+1, :)), ...
num2str(colorsSomatic(double(qMetric.isSomatic(iCluster) == 1)+1, :)), ...
num2str(colorsGdBad(double(qMetric.spatialDecaySlope(iCluster) <= param.minSpatialDecaySlope)+1, :)),...
num2str(colorsGdBad(double(qMetric.waveformBaselineFlatness(iCluster) <= param.maxWvBaselineFraction)+1, :)),...
num2str(colorsGdBad(double(qMetric.waveformDuration_peakTrough(iCluster) >= param.minWvDuration && ...
qMetric.waveformDuration_peakTrough(iCluster) <= param.maxWvDuration)+1, :))));

Expand Down Expand Up @@ -393,7 +412,7 @@ function updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, i
set(guiData.rawLegend, 'String', ['Amplitude =', num2str(round(qMetric.rawAmplitude(iCluster))), 'uV', newline, ...
'SNR =', num2str(qMetric.signalToNoiseRatio(iCluster))])

if qMetric.rawAmplitude(iCluster) > param.minAmplitude && qMetric.signalToNoiseRatio(iCluster) >= param.minSNR
if qMetric.rawAmplitude(iCluster) >= param.minAmplitude && qMetric.signalToNoiseRatio(iCluster) >= param.minSNR
set(guiData.rawTitle, 'String', ['\color[rgb]{0 0 0}Mean raw waveform: \color[rgb]{0 0.5 0} amplitude, \color[rgb]{0 0.5 0} SNR ']);
elseif qMetric.rawAmplitude(iCluster) > param.minAmplitude
set(guiData.rawTitle, 'String', ['\color[rgb]{0 0 0}Mean raw waveform: \color[rgb]{0 0.5 0} amplitude, \color[rgb]{1 0 0} SNR ']);
Expand Down Expand Up @@ -506,9 +525,9 @@ function updateUnit(unitQualityGuiHandle, memMapData, ephysData, rawWaveforms, i
set(guiData.ampliLine,'XData',[qMetric.useTheseTimesStart(iCluster), qMetric.useTheseTimesStop(iCluster)],...
'YData', [max(theseAmplis)*0.9, max(theseAmplis)*0.9]);

if qMetric.nSpikes(iCluster) > param.minNumSpikes && qMetric.presenceRatio(iCluster) >= param.minPresenceRatio
if qMetric.nSpikes(iCluster) >= param.minNumSpikes && qMetric.presenceRatio(iCluster) >= param.minPresenceRatio
set(guiData.ampliTitle, 'String', '\color[rgb]{0 0 0}Spikes: \color[rgb]{0 .5 0}number, \color[rgb]{0 .5 0}presence ratio');
elseif qMetric.nSpikes(iCluster) > param.minNumSpikes
elseif qMetric.nSpikes(iCluster) >= param.minNumSpikes
set(guiData.ampliTitle, 'String', '\color[rgb]{0 0 0}Spikes: \color[rgb]{0 .5 0}number, \color[rgb]{1 0 1}presence ratio');
else
set(guiData.ampliTitle, 'String', '\color[rgb]{0 0 0}Spikes: \color[rgb]{1 0 1}number, \color[rgb]{1 0 1}presence ratio');
Expand Down

0 comments on commit 9b6917b

Please sign in to comment.