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feat: algorithm sequencing #173

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feat: algorithm sequencing

feat: algorithm sequencing #173

Workflow file for this run

.github/workflows/linux.yml at 178622e
name: Linux
on:
pull_request:
push:
branches: [ main ]
tags: [ '*' ]
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
defaults:
run:
shell: bash
env:
hipo_version: 380d54ec47086b31fe13e637329748b2df06ea84
fmt_version: 9.1.0
jobs:
# dependencies
#########################################################
build_hipo:
name: Build HIPO
runs-on: ubuntu-latest
steps:
- name: checkout hipo
uses: actions/checkout@v4
with:
repository: gavalian/hipo
ref: ${{ env.hipo_version }}
- name: build
run: |
cmake -S . -B build -DCMAKE_INSTALL_PREFIX=hipo -DCMAKE_POSITION_INDEPENDENT_CODE=ON
cmake --build build -j2
cmake --install build
- run: tree hipo
- name: tar
run: tar czvf hipo{.tar.gz,}
- uses: actions/upload-artifact@v3
with:
name: build
retention-days: 1
path: hipo.tar.gz
build_fmt:
name: Build fmt
runs-on: ubuntu-latest
steps:
- name: checkout fmt
uses: actions/checkout@v4
with:
repository: fmtlib/fmt
ref: ${{ env.fmt_version }}
- name: build
run: |
cmake -S . -B build -DCMAKE_INSTALL_PREFIX=fmt -DCMAKE_POSITION_INDEPENDENT_CODE=ON
cmake --build build -j2
cmake --install build
- run: tree fmt
- name: tar
run: tar czvf fmt{.tar.gz,}
- uses: actions/upload-artifact@v3
with:
name: build
retention-days: 1
path: fmt.tar.gz
# build
#########################################################
build_iguana:
name: Build Iguana
needs:
- build_hipo
- build_fmt
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: setup meson
run: python -m pip install meson ninja
- name: summarize dependencies
run: |
echo '### Dependencies' >> $GITHUB_STEP_SUMMARY
echo '| Dependency | Version |' >> $GITHUB_STEP_SUMMARY
echo '| --- | --- |' >> $GITHUB_STEP_SUMMARY
for dep in python meson ninja ; do
echo "| \`$dep\` | $($dep --version) |" >> $GITHUB_STEP_SUMMARY
done
echo "| \`fmt\` | ${{ env.fmt_version }} |" >> $GITHUB_STEP_SUMMARY
echo "| \`hipo\` | ${{ env.hipo_version }} |" >> $GITHUB_STEP_SUMMARY
- name: get build artifacts
uses: actions/download-artifact@v3
with:
name: build
- name: untar build
run: ls *.tar.gz | xargs -I{} tar xzvf {}
- run: tree
- name: configure
run: ./configure.py --hipo hipo --fmt fmt
- name: build
run: ./install-iguana.sh
- name: dump build log
if: always()
run: cat build-iguana/meson-logs/meson-log.txt
- name: readelf iguana
run: |
for obj in $(ls iguana/bin/*) $(find iguana -name "*.so") ; do
echo "[+++] READELF $obj"
readelf -d $obj
done
- run: tree iguana
- name: tar
run: tar czvf iguana{.tar.gz,}
- uses: actions/upload-artifact@v3
with:
name: build
retention-days: 1
path: iguana.tar.gz
# download test data
#########################################################
download_validation_files:
name: Download validation files
runs-on: ubuntu-latest
steps:
- name: download
run: wget --no-check-certificate http://clasweb.jlab.org/clas12offline/distribution/clas12-timeline/validation_files.tar.gz
- name: list
run: tar tzvf validation_files.tar.gz
- uses: actions/upload-artifact@v3
with:
name: validation_files
retention-days: 1
path: validation_files.tar.gz
# run tests
#########################################################
test_iguana:
name: Test Iguana
needs:
- download_validation_files
- build_iguana
runs-on: ubuntu-latest
steps:
- name: get build artifacts
uses: actions/download-artifact@v3
with:
name: build
- name: get test data
uses: actions/download-artifact@v3
with:
name: validation_files
- name: untar artifacts
run: |
ls *.tar.gz | xargs -I{} tar xzvf {}
rm -v *.tar.gz
- name: tree artifacts
run: tree
- name: run test
run: |
test_file=$(find validation_files -name "*.hipo" | head -n1)
echo "[+] TEST FILE: $test_file"
for exe in $(find iguana/bin -executable -type f); do
echo "[+] EXECUTE TEST: $exe"
$exe $test_file
done
# documentation
#########################################################
doc_generate:
name: Generate documentation
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: doxygen
uses: mattnotmitt/doxygen-action@v1
with:
doxyfile-path: doc/Doxyfile
- uses: actions/upload-pages-artifact@v2
with:
retention-days: 1
path: doc/api/
doc_deploy:
if: ${{ github.head_ref == 'main' || github.ref_name == 'main' }}
name: Deploy documentation
needs: doc_generate
permissions:
pages: write
id-token: write
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
runs-on: ubuntu-latest
steps:
- name: deployment
id: deployment
uses: actions/deploy-pages@v2