Continuous Integration #224
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Continuous Integration | |
| on: | |
| schedule: | |
| - cron: "0 8 * * 1-5" | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| concurrency: | |
| group: actions-id-${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-formatting: | |
| name: Check Build and Formatting Errors | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install pycodestyle isort | |
| - name: Check Build | |
| run: | | |
| python -m pip install . | |
| - name: Run pycodestyle | |
| run: | | |
| pycodestyle --statistics --count --max-line-length=150 --show-source --ignore=E203 . | |
| - name: Check Import Ordering Errors | |
| run: | | |
| isort --check-only --verbose . | |
| build-and-test: | |
| needs: check-formatting | |
| continue-on-error: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| name: ${{ matrix.os }} Python ${{ matrix.python-version }} Subtest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-name: temp | |
| condarc: | | |
| channels: | |
| - defaults | |
| - conda-forge | |
| channel_priority: flexible | |
| create-args: | | |
| python=${{ matrix.python-version }} | |
| - name: Install Minimal Dependencies | |
| run: | | |
| python -m pip install -e . | |
| python -m pip install coverage pytest | |
| - name: Run Minimal Tests | |
| run: | | |
| coverage run --source=. --omit=astartes/__init__.py,setup.py,test/* -m pytest -v | |
| - name: Install Molecules Dependencies | |
| run: | | |
| python -m pip install -e .[molecules] | |
| - name: Run All Tests | |
| run: | | |
| coverage run --source=. --omit=astartes/__init__.py,setup.py,test/* -m pytest -v | |
| - name: Show Coverage | |
| run: | | |
| coverage report -m | |
| ipynb-ci: | |
| needs: check-formatting | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| nb-file: | |
| ["barrier_prediction_with_RDB7/RDB7_barrier_prediction_example", "train_val_test_split_sklearn_example/train_val_test_split_example", "split_comparisons/split_comparisons", "mlpds_2023_astartes_demonstration/mlpds_2023_demo"] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| name: Check ${{ matrix.nb-file }} Notebook Execution | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-name: temp | |
| condarc: | | |
| channels: | |
| - defaults | |
| - conda-forge | |
| channel_priority: flexible | |
| create-args: | | |
| python=3.11 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -e .[molecules,demos] | |
| python -m pip install notebook | |
| - name: Test Execution | |
| run: | | |
| cd examples/$(dirname ${{ matrix.nb-file }}) | |
| jupyter nbconvert --to script $(basename ${{ matrix.nb-file }}).ipynb | |
| ipython $(basename ${{ matrix.nb-file }}).py | |
| coverage-check: | |
| if: contains(github.event.pull_request.labels.*.name, 'PR Ready for Review') | |
| needs: [build-and-test, ipynb-ci] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install -e .[molecules] | |
| python -m pip install coverage | |
| - name: Run Tests | |
| run: | | |
| coverage run --source=. --omit=astartes/__init__.py,setup.py,test/*,astartes/samplers/sampler.py -m unittest discover -v | |
| - name: Show Coverage | |
| run: | | |
| coverage report -m > temp.txt | |
| cat temp.txt | |
| python .github/workflows/coverage_helper.py | |
| echo "COVERAGE_PERCENT=$(cat temp2.txt)" >> $GITHUB_ENV | |
| - name: Request Changes via Review | |
| if: ${{ env.COVERAGE_PERCENT < 90 }} | |
| uses: andrewmusgrave/[email protected] | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| event: REQUEST_CHANGES | |
| body: "Increase test coverage from ${{ env.COVERAGE_PERCENT }}% to at least 90% before merging." | |
| - name: Approve PR if Coverage Sufficient | |
| if: ${{ env.COVERAGE_PERCENT > 89 }} | |
| uses: andrewmusgrave/[email protected] | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| event: APPROVE | |
| body: "Test coverage meets or exceeds 90% threshold (currently ${{ env.COVERAGE_PERCENT }}%)." | |
| ci-report-status: | |
| name: report CI status | |
| needs: [build-and-test, ipynb-ci] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: | | |
| result_1="${{ needs.build-and-test.result }}" | |
| result_2="${{ needs.ipynb-ci.result }}" | |
| if test $result_1 == "success" && test $result_2 == "success"; then | |
| exit 0 | |
| else | |
| exit 1 | |
| fi | |