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J7F9 refactorisation (#80)
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* [REFAC] pipeline J7F9 to conform with the Pipeline class

* [TEST] init a test for conftest.py

* [REFAC] adding analyses outputs

* [TEST] updating tests for J7F9

* Cleaning connections

* [TEST] bug with pipelines/test_utils

* [BUG] issue with iterating over dicts

* [BUG] replace mkdir by makedirs in get_parameters

* [BUG] inside unit_tests workflow

* [TEST] testing the conftest module

* [REFAC] [skip ci]

* [TEST] test get_confounds method [skip ci]

* [TEST] test get_confounds method [skip ci]

* [PEP8] [skip ci]

* [BUG] runs inputs of get_subject_information no longer needed [skip ci]

* [BUG] get_confounds input [skip ci]

* [BUG] get_confounds input [skip ci]

* Cleaning code [skip ci]

* [BUG] real subject ids for search patterns [skip ci]

* Consistent Bunches along runs as output of subject_information [skip ci]

* [BUG] with subject_information Bunch [skip ci]

* Bug with group level [skip ci]

* Remove large files earlier in the process [skip ci]

* [TEST] exhaustive testing of get_subject_information for J7F9 [skip ci]

* [BUG] get_contrasts_2 iterfield [skip ci]
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bclenet authored Jan 5, 2024
1 parent 94cf9cb commit 6e48177
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Showing 6 changed files with 853 additions and 503 deletions.
2 changes: 1 addition & 1 deletion narps_open/pipelines/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,7 @@
'I52Y': None,
'I9D6': None,
'IZ20': None,
'J7F9': None,
'J7F9': 'PipelineTeamJ7F9',
'K9P0': None,
'L1A8': None,
'L3V8': None,
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