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Anima scripts v3.0
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@ocommowi ocommowi released this 02 Sep 15:53
· 86 commits to master since this release
v3.0
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Learn about vigilant mode.

Major release of Anima and Anima scripts: more docs and a website are coming to town !

Anima scripts is a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform for most scripts (as long as python is available for your system), except for atlasing scripts that require an OAR scheduler. If you are using Anima scripts for your research, please take the time to:

  • Cite the relevant papers referenced in the documentation
  • Add a sentence in your acknowledgments section or in the methods part of your paper referencing the RRID of Anima scripts: RRID:SCR_017072, and the one of Anima : RRID:SCR_017017
  • if possible, add the link to Anima website: https://anima.irisa.fr

This new release contains the following updates:

  • Documentation has moved to read-the-docs for an easier to read version.
  • New general website for Anima and Anima scripts available
  • Requires Anima v4.0 or higher
  • Atlasing scripts now produce all their main results in a residualDir folder and better support input file extensions
  • Updated atlas for brain extraction in additional data
  • Minor bug corrections in diffusion and relaxometry scripts

More details on the scripts are available in the documentation.

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