fix normalization

Inria-Empenn · Mar 11, 2021 · 578314d · 578314d
1 parent 1849b32
commit 578314d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ms_lesion_segmentation/animaMSLongitudinalPreprocessing.py b/ms_lesion_segmentation/animaMSLongitudinalPreprocessing.py
@@ -117,7 +117,7 @@ def call(command):
         if templateFlair:
             if os.path.exists(templateFlair):
                 # Normalize intensities with the given template
-                call([animaNyulStandardization, "-m", flair, "-r", templateFlair, "-o", flair])
+                call([animaNyulStandardization, "-m", brain, "-r", templateFlair, "-o", brain])
             else:
                 print('Template file ' + templateFlair + ' not found, skipping normalization.')