Skip to content

Commit

Permalink
Merge pull request #194 from dominikl/globus
Browse files Browse the repository at this point in the history
Add instructions for Globus
  • Loading branch information
pwalczysko authored May 17, 2024
2 parents 7715f1a + bbaa18f commit d16c10a
Show file tree
Hide file tree
Showing 5 changed files with 25 additions and 3 deletions.
26 changes: 24 additions & 2 deletions _includes/filezilla.md
Original file line number Diff line number Diff line change
@@ -1,14 +1,36 @@
## General instructions

The raw data of all studies published in IDR can be downloaded using using anonymous File Transfer Protocol (FTP). We recommend using the [FileZilla client](https://filezilla-project.org/download.php).
The raw data of all studies published in IDR can be downloaded using [Globus](https://www.globus.org/) or anonymous File Transfer Protocol (FTP).

You can download both whole studies as well as parts/single images.

We recommend using the Globus.

## Globus

Download and install [Globus connect personal](https://www.globus.org/globus-connect-personal).

You might have to create an account, or you can use other login providers like ORCiD.

Go to "Web: Transfer files" to get to the Web UI.

<img src="img/filezilla/globus_1.png" alt="Globus Web UI" />

Then in the File Manager / Collections search for "EMBL-EBI Public Data".

<img src="img/filezilla/globus_2.png" alt="Globus Collection search" width="50%" />

In there you should be able to navigate through the same directory structure like on the FTP server /pub/databases/IDR/ to get to the IDR submission you want to download.

<img src="img/filezilla/globus_3.png" alt="Globus IDR collection" width="50%" />

## FTP

The ftp host is available using the following details:

- host: `ftp.ebi.ac.uk`

## Desktop client step-by-step
### Desktop client step-by-step

Download and install the [FileZilla client](https://filezilla-project.org/download.php).

Expand Down
2 changes: 1 addition & 1 deletion download.html
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ <h1 class="hero-main-header">Data download</h1>
<p class="hero-subheader small-10 medium-10 large-10 small-offset-1 medium-offset-1 large-offset-1">
The raw imaging data for all studies published in the
Image Data Resource (IDR) is available for download using
the FTP protocol.
Globus or the FTP protocol.
</p>
</div>
</div>
Expand Down
Binary file added img/filezilla/globus_1.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added img/filezilla/globus_2.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added img/filezilla/globus_3.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.

0 comments on commit d16c10a

Please sign in to comment.