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prepare release v0.5.4 (#1469) #4736

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Run time

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Job	Run time
mac (3.12)	19m 3s
base (3.10)	5m 10s
base (3.12)	9m 2s
julia (3.10)	16m 7s
hierarchical (3.10)	4m 3s
julia (3.12)	16m 20s
optimize (3.12)	4m 12s
hierarchical (3.12)	4m 37s
petab (3.10)	19m 38s
petab (3.12)	22m 28s
quality (3.12)	20s
select (3.10)	3m 26s
select (3.12)	4m 9s
windows (3.12)	1m 38s
docs (3.11)	10m 24s
notebooks1 (3.10)	8m 45s
notebooks2 (3.10)	6m 22s
	2h 35m 44s