Updates based on thorough first user assessment #426
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* subtle changes to doc * indicate that batch collection is optional - addresses a bit #418 * adjust color of get buttons; parallelize format * slight changes, should close #413 * adding explocit helper file to batch correction, closes #418 * do the tip more obvious and change here to this page * closes #414 * making top links more obvious; no order change #415 * make cOmicsArt print prettier * make letters bold * changed to show debug text again; to let user know what is going on addresses #421 (#422)
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