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Correct issues with original contribution.
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Vendor names did not match official names (corrected in
reagent_resources.csv and individual supporting material files) and
the forward slash character was replaced with a dash in the original
contribution and should have been replaced with an underscore.
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@zivy
zivy committed Oct 22, 2024
1 parent 096d59e commit b70a29d
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2 changes: 1 addition & 1 deletion data/image_resources.csv
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Expand Up @@ -226,5 +226,5 @@ UCHL1_Unconjugated/UCHL1_AF647_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary
SMAD2_Unconjugated/SMAD2_AF647_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary Fibrosis) FFPE: SMAD2 (magenta) and DAPI (blue)",71b83e5a91ee19fac9799d821601215a,['SMAD2_Unconjugated/0000-0002-8728-1735.md']
TAK1_Unconjugated/TAK1_AF488_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary Fibrosis) FFPE: TAK1 (green) and DAPI (blue)",8b90fe4e4d22d782bdbf61937c10d372,['TAK1_Unconjugated/0000-0002-8728-1735.md']
Podoplanin_Unconjugated/Podoplanin_AF647_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary Fibrosis) FFPE: Podoplanin (magenta) and DAPI (blue)",0dfdae7b6b81fe9a76805bb68fb65a9b,['Podoplanin_Unconjugated/0000-0002-8728-1735.md']
Phospho-SMAD1-5_Unconjugated/pSMAD1-5_AF647_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary Fibrosis) FFPE: Phospho-SMAD1/5 (magenta) and DAPI (blue)",d7afba5084dba3992b4afbdf8b3fc901,['Phospho-SMAD1-5_Unconjugated/0000-0002-8728-1735.md']
Phospho-SMAD1_5_Unconjugated/pSMAD1-5_AF647_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary Fibrosis) FFPE: Phospho-SMAD1/5 (magenta) and DAPI (blue)",d7afba5084dba3992b4afbdf8b3fc901,['Phospho-SMAD1_5_Unconjugated/0000-0002-8728-1735.md']
TGFBR2_Unconjugated/TGFBR2_AF647_Human_Lung.jpg,"Human lung (Idiopathic Pulmonary Fibrosis) FFPE: TGFBR2 (magenta) and DAPI (blue)",896ea55bacf80d87e7d96ea93fc3e311,['TGFBR2_Unconjugated/0000-0002-8728-1735.md']
10 changes: 5 additions & 5 deletions data/reagent_resources.csv
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Expand Up @@ -1219,12 +1219,12 @@ P15379,Primary Antibody,CD44,Mouse,Rat,NA,IM7,AAT Bioquest,104410C1,iF594,NA,Sto
P22646,Primary Antibody,CD3,Mouse,Rat,IgG2b,17A2,BD Biosciences,557869,AF647,AB_396912,Stock,IBEX2D Manual,1:4 Cytofix/Cytoperm Fixed Frozen,Pancreatic Ductal Adenocarcinoma,Tumor,0.3% Triton-X-100,NA,1 mg/ml LiBH4 15 minutes,Yes,0009-0007-0646-7946,NA,0009-0007-0646-7946
P22646,Primary Antibody,CD3,Mouse,Rat,IgG2b,17A2,Thermo Fisher Scientific,58-0032-80,AF532,AB_11220474,Stock,IBEX2D Manual,1:4 Cytofix/Cytoperm Fixed Frozen,Pancreatic Ductal Adenocarcinoma,Tumor,0.3% Triton-X-100,NA,1 mg/ml LiBH4 15 minutes,Yes,0009-0007-0646-7946,NA,0009-0007-0646-7946
P01731,Primary Antibody,CD8,Mouse,Rat,IgG2a,53-6.7,BioLegend,100724,AF647,AB_389326,Stock,IBEX2D Manual,1:4 Cytofix/Cytoperm Fixed Frozen,Pancreatic Ductal Adenocarcinoma,Tumor,0.3% Triton-X-100,NA,1 mg/ml LiBH4 15 minutes,Yes,0009-0007-0646-7946,NA,0009-0007-0646-7946
Q86YL7,Primary Antibody,Podoplanin,Human,Mouse,IgG1k,D2-40,Biolegend,916601,Unconjugated,AB_2565182,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
Q86YL7,Primary Antibody,Podoplanin,Human,Mouse,IgG1,D2-40,BioLegend,916601,Unconjugated,AB_2565182,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
P09936,Primary Antibody,UCHL1,Human,Rabbit,IgG,Polyclonal,Proteintech,14730-1-AP,Unconjugated,AB_2210497,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
P84022,Primary Antibody,SMAD3,Human,Rabbit,IgG,Polyclonal,Abcam,ab28379,Unconjugated,AB_2192903,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
O43318,Primary Antibody,TAK1,Human,Rabbit,IgG,Polyclonal,Proteintech,12330-2-AP,Unconjugated,AB_2140101,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
Q15796,Primary Antibody,SMAD2,Human,Mouse,IgG1,L16D3,Cell signaling,3103,Unconjugated,AB_490816,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
Q15796,Primary Antibody,SMAD2,Human,Mouse,IgG1,L16D3,Cell Signaling Technology,3103,Unconjugated,AB_490816,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
P37173,Primary Antibody,TGFBR2,Human,Mouse,IgG1,MM0056-4F14,Abcam,ab78419,Unconjugated,AB_1603198,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
NA,Primary Antibody,Phospho-SMAD1/5,Human,Rabbit,IgG,41D10,Cell signaling,9516,Unconjugated,AB_491015,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
P04275,Primary Antibody,VWF,Human,Rabbit,IgG,D8L8G,Cell signaling,65707,Unconjugated,AB_2799692,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
NA,Primary Antibody,Phospho-TAK1,Human,Rabbit,IgG,Polyclonal,Thermo Fisher,PA5-99340,Unconjugated,AB_2818273,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
NA,Primary Antibody,Phospho-SMAD1/5,Human,Rabbit,IgG,41D10,Cell Signaling Technology,9516,Unconjugated,AB_491015,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
P04275,Primary Antibody,VWF,Human,Rabbit,IgG,D8L8G,Cell Signaling Technology,65707,Unconjugated,AB_2799692,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
NA,Primary Antibody,Phospho-TAK1,Human,Rabbit,IgG,Polyclonal,Thermo Fisher Scientific,PA5-99340,Unconjugated,AB_2818273,Stock,IBEX2D Manual,FFPE,Lung,Idiopathic Pulmonary Fibrosis,0.3% Triton-X-100,10 mM citrate buffer (pH 6.0) for 30 minutes at 95C,NA,Yes,0000-0002-8728-1735,NA,0000-0002-8728-1735
2 changes: 1 addition & 1 deletion ...AD1-5_Unconjugated/0000-0002-8728-1735.md → ...AD1_5_Unconjugated/0000-0002-8728-1735.md
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Expand Up @@ -6,7 +6,7 @@ layout: default

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|------------:|:--------------------------|-----------------:|:-------------|:-----------|:---------------|:-----------------------|:----------------------|:----------------|:------------------------------|:------------------|:-------------------------------------------------------------------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:------------|
| NA | Primary Antibody | Phospho-SMAD1/5 | Human | Rabbit | IgG | 41D10 | Cell signaling | 9516 | Unconjugated | AB_491015 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |
| NA | Primary Antibody | Phospho-SMAD1/5 | Human | Rabbit | IgG | 41D10 | Cell Signaling Technology | 9516 | Unconjugated | AB_491015 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |


# Publications
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0 ...nconjugated/pSMAD1-5_AF647_Human_Lung.jpg → ...nconjugated/pSMAD1-5_AF647_Human_Lung.jpg
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2 changes: 1 addition & 1 deletion docs/supporting_material/Phospho-TAK1_Unconjugated/0000-0002-8728-1735.md
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| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|------------:|:--------------------------|-----------------:|:-------------|:-----------|:---------------|:-----------------------|:----------------------|:----------------|:------------------------------|:------------------|:-------------------------------------------------------------------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:------------|
| NA | Primary Antibody | Phospho-TAK1 | Human | Rabbit | IgG | Polyclonal | Thermo Fisher | PA5-99340 | Unconjugated | AB_2818273 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |
| NA | Primary Antibody | Phospho-TAK1 | Human | Rabbit | IgG | Polyclonal | Thermo Fisher Scientific | PA5-99340 | Unconjugated | AB_2818273 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |


# Publications
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2 changes: 1 addition & 1 deletion docs/supporting_material/Podoplanin_Unconjugated/0000-0002-8728-1735.md
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| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|------------:|:--------------------------|-----------------:|:-------------|:-----------|:---------------|:-----------------------|:----------------------|:----------------|:------------------------------|:------------------|:-------------------------------------------------------------------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:------------|
| Q86YL7 | Primary Antibody | Podoplanin | Human | Mouse | IgG1k | D2-40 | Biolegend | 916601 | Unconjugated | AB_2565182 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |
| Q86YL7 | Primary Antibody | Podoplanin | Human | Mouse | IgG1 | D2-40 | BioLegend | 916601 | Unconjugated | AB_2565182 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |


# Publications
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2 changes: 1 addition & 1 deletion docs/supporting_material/SMAD2_Unconjugated/0000-0002-8728-1735.md
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| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|------------:|:--------------------------|-----------------:|:-------------|:-----------|:---------------|:-----------------------|:----------------------|:----------------|:------------------------------|:------------------|:-------------------------------------------------------------------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:------------|
| Q15796 | Primary Antibody | SMAD2 | Human | Mouse | IgG1 | L16D3 | Cell signaling | 3103 | Unconjugated | AB_490816 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |
| Q15796 | Primary Antibody | SMAD2 | Human | Mouse | IgG1 | L16D3 | Cell Signaling Technology | 3103 | Unconjugated | AB_490816 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |


# Publications
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2 changes: 1 addition & 1 deletion docs/supporting_material/VWF_Unconjugated/0000-0002-8728-1735.md
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| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|------------:|:--------------------------|-----------------:|:-------------|:-----------|:---------------|:-----------------------|:----------------------|:----------------|:------------------------------|:------------------|:-------------------------------------------------------------------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:------------|
| P04275 | Primary Antibody | VWF | Human | Rabbit | IgG | D8L8G | Cell signaling | 65707 | Unconjugated | AB_2799692 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |
| P04275 | Primary Antibody | VWF | Human | Rabbit | IgG | D8L8G | Cell Signaling Technology | 65707 | Unconjugated | AB_2799692 | Stock | IBEX2D Manual | FFPE | Lung | Idiopathic Pulmonary Fibrosis | 0.3% Triton-X-100 | 10 mM citrate buffer (pH 6.0) for 30 minutes at 95C | NA | Yes | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | NA | [0000-0002-8728-1735](https://orcid.org/0000-0002-8728-1735) | [1](#notes) |


# Publications
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