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updating with final week results
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holtjma committed Feb 11, 2022
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5 changes: 5 additions & 0 deletions README.md
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Expand Up @@ -13,6 +13,7 @@ The initial release just included the final results files that are reviewed afte
Since then, the following information has been added:

- (2021-12-13) Descriptions and links to the specific reference files
- (2022-02-08) Descriptions and links to the benchmark truth sets (VCF and BED when available)

We rarely change the reference files we are testing with.
However, aligners and callers are added/updated semi-frequently depending on the significance of the change and reported performance by the developers/researchers.
Expand All @@ -37,3 +38,7 @@ Examples of things already on the TODO radar:
- Rules for aligners and callers
- Rules for evaluation
- ~~Description/links to specific reference files~~

## Release cadence
Starting with Release 2022-02-11, we intend to restrict the formal releases to _at most_ once a week.
New or potentially partial results may appear throughout the work week, but we intend to summarize these with a single formal release each week.
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72 changes: 72 additions & 0 deletions results/20220211/small_summary_20220211.csv
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prep,reference,aligner,caller,N,Precision,Sensitivity,F-measure,vc_run_time
PCR-free-illumina,clinical,sentieon-201808.07,strelka-2.9.10,8,0.992325,0.9919875,0.992175,-1.0
PCR-free-illumina,hg38_GIAB_masked,dragmap-1.2.1,clair3-0.1-r9,8,0.9976375000000001,0.992425,0.995025,58347.462325
PCR-free-illumina,hg38_GIAB_masked,dragmap-1.2.1,deepvariant-1.2.0,8,0.9989375,0.9928125000000001,0.9958750000000001,74635.7289875
PCR-free-illumina,hg38_GIAB_masked,dragmap-1.2.1,dnascope-0.5-202010.04-PO,8,0.99845,0.9924249999999999,0.995425,-1.0
PCR-free-illumina,hg38_GIAB_masked,dragmap-1.2.1,dnascope-1.0-202112.01-PO,8,0.9984375,0.994225,0.9963124999999999,-1.0
PCR-free-illumina,hg38_GIAB_masked,dragmap-1.2.1,octopus-0.7.4,8,0.9962,0.9899249999999999,0.9930625,45715.272287499996
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PCR-free-illumina,hg38_asm5_alt,snap-2.0.0,dnascope-1.0-202112.01-PO,8,0.9976375,0.9941375000000001,0.9958750000000001,-1.0
PCR-free-illumina,hg38_asm5_alt,snap-2.0.0,octopus-0.7.4,8,0.9943875,0.9905125,0.9924625,45841.266975
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