build based on 23bd8c63

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-07-05T14:47:23","documenter_version":"1.5.0"}}
+{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-07-10T07:46:24","documenter_version":"1.5.0"}}

dev/Build/Build_with_makeup/index.html

@@ -79,4 +79,4 @@
 
 # or not to mess up the output, use just one process for compilations
 
-gmake NPES=1 -i</code></pre><h3 id="Creating-precompiled-installation"><a class="docs-heading-anchor" href="#Creating-precompiled-installation">Creating precompiled installation</a><a id="Creating-precompiled-installation-1"></a><a class="docs-heading-anchor-permalink" href="#Creating-precompiled-installation" title="Permalink"></a></h3><p>If you want to provide precompiled libraries, objects, source code to other users so that they do not have to start compilation from scratch, then make a distribution or precompiled installation as follows:</p><pre><code class="language-bash hljs">gmake PRECOMPILED=/a/precompiled/rootdir precompiled</code></pre><p>After this the stuff you just compiled ends up in directory <code>/a/precompiled/rootdir</code> with two subdirectories : <code>src/</code> and <code>util/</code>. All executables are currently removed.</p><p>You can repeat this call, and it will just <code>rsync</code> the modified bits.</p><h3 id="Update/check-your-interface-blocks-outside-configure"><a class="docs-heading-anchor" href="#Update/check-your-interface-blocks-outside-configure">Update/check your interface blocks outside <code>configure</code></a><a id="Update/check-your-interface-blocks-outside-configure-1"></a><a class="docs-heading-anchor-permalink" href="#Update/check-your-interface-blocks-outside-configure" title="Permalink"></a></h3><p>The <code>configure</code> has options -c or -g to check up or enforce for (re-)creation of interface blocks of projects <code>arp</code> and <code>ald</code>. To avoid full and lengthy <code>configure</code>-run, you can just do the following:</p><pre><code class="language-bash hljs">gmake intfb</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Build_with_cmake/">« CMake</a><a class="docs-footer-nextpage" href="../../System/MFaccess/">MF Access »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Friday 5 July 2024 14:47">Friday 5 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+gmake NPES=1 -i</code></pre><h3 id="Creating-precompiled-installation"><a class="docs-heading-anchor" href="#Creating-precompiled-installation">Creating precompiled installation</a><a id="Creating-precompiled-installation-1"></a><a class="docs-heading-anchor-permalink" href="#Creating-precompiled-installation" title="Permalink"></a></h3><p>If you want to provide precompiled libraries, objects, source code to other users so that they do not have to start compilation from scratch, then make a distribution or precompiled installation as follows:</p><pre><code class="language-bash hljs">gmake PRECOMPILED=/a/precompiled/rootdir precompiled</code></pre><p>After this the stuff you just compiled ends up in directory <code>/a/precompiled/rootdir</code> with two subdirectories : <code>src/</code> and <code>util/</code>. All executables are currently removed.</p><p>You can repeat this call, and it will just <code>rsync</code> the modified bits.</p><h3 id="Update/check-your-interface-blocks-outside-configure"><a class="docs-heading-anchor" href="#Update/check-your-interface-blocks-outside-configure">Update/check your interface blocks outside <code>configure</code></a><a id="Update/check-your-interface-blocks-outside-configure-1"></a><a class="docs-heading-anchor-permalink" href="#Update/check-your-interface-blocks-outside-configure" title="Permalink"></a></h3><p>The <code>configure</code> has options -c or -g to check up or enforce for (re-)creation of interface blocks of projects <code>arp</code> and <code>ald</code>. To avoid full and lengthy <code>configure</code>-run, you can just do the following:</p><pre><code class="language-bash hljs">gmake intfb</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Build_with_cmake/">« CMake</a><a class="docs-footer-nextpage" href="../../System/MFaccess/">MF Access »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Wednesday 10 July 2024 07:46">Wednesday 10 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/DataAssimilation/CHKEVO/index.html

@@ -20,4 +20,4 @@
  CHKEVO :   1.3677546254375832       0.22965677860570116     
  CHKEVO :   1.1506125378848564       0.20575065246468008     
  CHKEVO :  0.98597708942270756       0.19299583141063531
-.....</code></pre><ul><li>The first column contains the string <code>CHKEVO :</code></li><li>Second column contains the RMS of dps/dt averaged over the domain.</li><li>Second column contains the AVG of dps/dt averaged over the domain.</li></ul><p>The RMS of dps/dt alone can be extracted with:</p><pre><code class="language-bash hljs">grep &quot;^ CHKEVO : &quot; HM_Date_2013041118.html | tail -n +2 | awk &#39;{print $3}&#39;</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../MTEN/">« MTEN</a><a class="docs-footer-nextpage" href="../NWECHKEVO/">NWECHKEVO »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Friday 5 July 2024 14:47">Friday 5 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+.....</code></pre><ul><li>The first column contains the string <code>CHKEVO :</code></li><li>Second column contains the RMS of dps/dt averaged over the domain.</li><li>Second column contains the AVG of dps/dt averaged over the domain.</li></ul><p>The RMS of dps/dt alone can be extracted with:</p><pre><code class="language-bash hljs">grep &quot;^ CHKEVO : &quot; HM_Date_2013041118.html | tail -n +2 | awk &#39;{print $3}&#39;</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../MTEN/">« MTEN</a><a class="docs-footer-nextpage" href="../NWECHKEVO/">NWECHKEVO »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Wednesday 10 July 2024 07:46">Wednesday 10 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/DataAssimilation/DaAlgorithms/index.html

@@ -33,4 +33,4 @@
                                             # Only meaningful if SURFEX_LSELECT=yes
     SFXSWFTIMES=$SFXSELTIMES                # SURFEX select FA file IO server gathering times
     SWRITUPTIMES="00-06:1"                  # Surfex model state output times
-    SFXWFTIMES=$SWRITUPTIMES                # SURFEX history FA file IO server gathering times</code></pre><ul><li><p>Then run one cycle for at least 6h so that all the prerequesite files are generated before turning on IAUVAR.</p></li><li><p>Second thing, when the previous run has completed, is to set the IAUVAR <code>ecf/config_exp.h</code> to yes and keep running.  It should be automatic to continue as usual. Make sure that you do not manually set <code>LL</code> to be shorter then 6h.</p></li></ul><p>The surface assimilation is moved to the start of the forecast and hence it is only the upper air assimilation that is involved in the IAU.</p><div class="admonition is-info"><header class="admonition-header">Note</header><div class="admonition-body"><p>There is a difference between the first run with IAUVAR and all the following, due to the first run couples to a run done without IAU and the others couple to a run that has done IAU, so the files used as startfiles are different in valid times. To this effect the first run saves a semaphore file in the <code>$SCRATCH/hm_home/exp_name/</code> directory for the following runs to react to!  So if you need to rerun the first run, for some reason, that semaphore file (named <code>is_iauvar</code>) needs to be manually removed!!</p></div></div><h3 id="Flow-diagram-of-IAU-(Magnus-will-help)"><a class="docs-heading-anchor" href="#Flow-diagram-of-IAU-(Magnus-will-help)">Flow diagram of IAU (Magnus will help)</a><a id="Flow-diagram-of-IAU-(Magnus-will-help)-1"></a><a class="docs-heading-anchor-permalink" href="#Flow-diagram-of-IAU-(Magnus-will-help)" title="Permalink"></a></h3></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../StructureFunctions/">« Structure functions</a><a class="docs-footer-nextpage" href="../DigitalFilterInitialization/">Digital Filter Initialization »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Friday 5 July 2024 14:47">Friday 5 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+    SFXWFTIMES=$SWRITUPTIMES                # SURFEX history FA file IO server gathering times</code></pre><ul><li><p>Then run one cycle for at least 6h so that all the prerequesite files are generated before turning on IAUVAR.</p></li><li><p>Second thing, when the previous run has completed, is to set the IAUVAR <code>ecf/config_exp.h</code> to yes and keep running.  It should be automatic to continue as usual. Make sure that you do not manually set <code>LL</code> to be shorter then 6h.</p></li></ul><p>The surface assimilation is moved to the start of the forecast and hence it is only the upper air assimilation that is involved in the IAU.</p><div class="admonition is-info"><header class="admonition-header">Note</header><div class="admonition-body"><p>There is a difference between the first run with IAUVAR and all the following, due to the first run couples to a run done without IAU and the others couple to a run that has done IAU, so the files used as startfiles are different in valid times. To this effect the first run saves a semaphore file in the <code>$SCRATCH/hm_home/exp_name/</code> directory for the following runs to react to!  So if you need to rerun the first run, for some reason, that semaphore file (named <code>is_iauvar</code>) needs to be manually removed!!</p></div></div><h3 id="Flow-diagram-of-IAU-(Magnus-will-help)"><a class="docs-heading-anchor" href="#Flow-diagram-of-IAU-(Magnus-will-help)">Flow diagram of IAU (Magnus will help)</a><a id="Flow-diagram-of-IAU-(Magnus-will-help)-1"></a><a class="docs-heading-anchor-permalink" href="#Flow-diagram-of-IAU-(Magnus-will-help)" title="Permalink"></a></h3></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../StructureFunctions/">« Structure functions</a><a class="docs-footer-nextpage" href="../DigitalFilterInitialization/">Digital Filter Initialization »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.5.0 on <span class="colophon-date" title="Wednesday 10 July 2024 07:46">Wednesday 10 July 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>