Rename Old FMRIPREP (< v1.2.0) files

This script updates the names of some of the fmriprep files. Currently I'm ignoring figures. Ideally, I will be covering all anatomical and functional image outputs.

Quickstart

1. clone this repository

git clone https://github.com/HBClab/renameOldFMRIPREP.git

2. install the requirements

pip install -r requirements.txt

3. run the command help

./rename_old_fmriprep/conform_fmriprep.py -h

4. run the command on your data

./rename_old_fmriprep/conform_fmriprep.py \
    -i /path/to/old/fmriprep \
    -o /path/to/new/fmriprep \
    -d /path/to/dataset/description/dataset_description.json

The dataset_description.json is a json file that contains information about the dataset and the fmriprep version you ran previously

{
    "Name": "test_data",
    "BIDSVersion": "1.0.0",
    "PipelineDescription": {"Name": "fmriprep", "Version": "1.1.8"}
}

Now your data should be bids derivatives compliant!

Please let me know if something does not work properly in the issues