Changes in version 1.1.18:
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Gene expression data is now stored in the assays of the summarizedExperiment object returned by proActiv to facilitate easier filtering of the summarizedExperiment object. The metadata slot is now empty.
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Plotting promoter activity: Implementation of boxplotPromoters function to plot boxplots of absolute promoter activity, relative promoter activity, and gene expression.
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Identification of alternative promoters: Implementation of getAlternativePromoters, used to identify promoters that may exhibit alternative usage.