Merge pull request #451 from GoekeLab/fix_denovo_bug

Fix typo in extendAnnotations
GoekeLab · Oct 25, 2024 · 1e09799 · 1e09799
2 parents ab68c3f + 88ae480
commit 1e09799
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/bambu-extendAnnotations-utilityExtend.R b/R/bambu-extendAnnotations-utilityExtend.R
@@ -108,7 +108,7 @@ filterTranscriptsByAnnotation <- function(rowDataCombined, annotationGrangesList
     exonRangesCombined <- exonRangesCombined[filterSet]
     rowDataCombined <- rowDataCombined[filterSet,]
   }
-  if(sum(filterSet==0) & length(annotationGrangesList)==0) stop(
+  if(sum(filterSet)==0 & length(annotationGrangesList)==0) stop(
     "WARNING - No annotations were provided. Please increase NDR threshold to use novel transcripts")
   if(sum(filterSet)==0) message("WARNING - No novel transcripts meet the given thresholds. Try a higher NDR.")
   # (3) combine novel transcripts with annotations