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Finish draft of JOSS paper
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MFraters committed Feb 23, 2024
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46 changes: 46 additions & 0 deletions doc/JOSS/1.0/paper.bib
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Expand Up @@ -100,3 +100,49 @@ @article{McKenzie_1970
url = "http://www.sciencedirect.com/science/article/pii/0040195170901150",
author = "D.P. McKenzie"
}
@software{sebastien_jourdain_2024,
author = {Sebastien Jourdain (Kitware) and
Forrest Li and
Julien Finet and
Sankhesh Jhaveri and
Laurenn Lam and
Adnane Belmadiaf and
Matt McCormick and
Scott Wittenburg and
Alireza and
Thibault Bruyère and
Tom Birdsong and
Lucie Macron and
Shreeraj Jadhav and
JiayiXuu and
Patrick Avery and
rodrigobasilio2022 and
Jules BOURDAIS and
gandis and
Erik Ziegler and
RemiCecchinato and
Anne Haley and
Tom Suchel and
TristanWright and
David Thompson and
Mayeul Chassagnard and
Madison Dickson and
Aron Helser and
Paul Elliott and
ocrossi},
title = {Kitware/vtk-js: v29.7.2},
month = feb,
year = 2024,
publisher = {Zenodo},
version = {v29.7.2},
doi = {10.5281/zenodo.10680530},
url = {https://doi.org/10.5281/zenodo.10680530}
}

@article{billen_Fraters_AGU_2023,
title={A New Method for Assigning Thermal Structure to 2D and 3D Present-day Geodynamic and Seismological Models of Subduction Zones},
author={Billen, Magali I and Fraters, Menno},
journal={AGU23},
year={2023},
publisher={AGU}
}
16 changes: 8 additions & 8 deletions doc/JOSS/1.0/paper.md
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Expand Up @@ -35,6 +35,9 @@ authors:
- name: Daniel Douglas
orcid: 0
affiliation: "4"
- name: Yijun Wang
orcid: 0
affiliation: "5"
affiliations:
- name: Universiy of Florida, USA
index: 1
Expand All @@ -44,7 +47,9 @@ affiliations:
index: 3
- name: New Mexico Tech, USA
index: 4
date: 2 February 2023
- name: University of Oslo, Norway
index: 4
date: 23 February 2023
bibliography: paper.bib
---

Expand Down Expand Up @@ -88,7 +93,7 @@ Following these points will help to create a clean, portable, extendable code wi

## GWB User Philosophy

The user philosophy is build around the idea that users define tectonic features. These tectonic features can be parameterized by defining lines or areas where these features are in a map view. For example, a continental plate is an area on a map, so the user defines the area. A fault is a line on a map, so the user defines that line where the fault is. The user also provides information on the feature, such a thickness, which can be spatially variable, or dip angles. These parameters are then used to create the volume for the feature. Next users can attach one or many models to those volumes to define for example temperature or compositional variables. These can be very simple models, such as a uniform temperture distribution, or a more complex distrubution, such as a half space cooling model, or a McKenzie [@McKenzie_1970] or mass conserving (ref) slab temperature model.
The user philosophy is build around the idea that users define tectonic features. These tectonic features can be parameterized by defining lines or areas where these features are in a map view. For example, a continental plate is an area on a map, so the user defines the area. A fault is a line on a map, so the user defines that line where the fault is. The user also provides information on the feature, such a thickness, which can be spatially variable, or dip angles. These parameters are then used to create the volume for the feature. Next users can attach one or many models to those volumes to define for example temperature or compositional variables. These can be very simple models, such as a uniform temperture distribution, or a more complex distrubution, such as a half space cooling model, or a McKenzie [@McKenzie_1970] or mass conserving [@billen_Fraters_AGU_2023] slab temperature model.

All these parameterizations are set through a single input file. This file a JSON styled input file, which human read, write and editable. The main idea behind this design of the GWB so that users can easily create and modify complex parameterized initial conditions for their geodynamic or tectonic setting.

Expand Down Expand Up @@ -122,13 +127,8 @@ Below we show an example input file for a cartesian model, which can be easily c

# Acknowledgements

We would like to acknolege all other contributors to the project, especially Wolfang Bangerth, (Timo and Daniel if not on co-authors), Lorraine Hwang and John Naliboff for their advice and support through the years for this project. We would also like to acknowledge NSF for their funding and support through grands EAR-1620618 (CPO), OCE-1948902 (Cascadia), EAR-0949446 (CIG), EAR-1550901 (CIG) and EAR-1925677 (FRES).
We would like to acknolege all other contributors to the project, especially Lorraine Hwang, Becky Fildes and John Naliboff for their advice and support through the years for this project. We would also like to acknowledge NSF for their funding and support through grands EAR-1620618 (CPO), OCE-1948902 (Cascadia), EAR-0949446 (CIG), EAR-1550901 (CIG) and EAR-1925677 (FRES).

# References


# TODO
1. Decide on co-authors
2. write acknowledgments for other contributors who are not co-authors and for funding agencies
3. Add reference to Mass conserving temperature model?

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