Add draft JOSS paper #1930
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| - 'GWB-*' | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.actor }}-${{ github.ref }}-test | |
| cancel-in-progress: true | |
| jobs: | |
| test_indentation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup cmake | |
| uses: jwlawson/[email protected] | |
| with: | |
| cmake-version: '3.16.x' | |
| - name: Use cmake | |
| run: cmake --version | |
| - uses: actions/checkout@v2 | |
| - name: Install astyle | |
| shell: bash | |
| run: cd .. && mkdir astyle && cd astyle && wget 'https://sourceforge.net/projects/astyle/files/astyle/astyle 2.04/astyle_2.04_linux.tar.gz' && tar -zxvf astyle_2.04_linux.tar.gz && cd astyle/build/gcc && make && sudo make install && cd ../../../../ | |
| - name: Create Build Environment | |
| run: | | |
| mkdir build; | |
| cd build; | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: cmake .. | |
| - name: Indenting | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: make indent | |
| - name: Indenting | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: git status | |
| - name: check indentation | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| if [[ "$(git status | grep 'modified' --count)" -gt "0" ]]; then | |
| git diff > diff.log; | |
| cat diff.log; | |
| exit 1; | |
| fi | |
| test_linux_and_macos: | |
| needs: test_indentation | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest','macos-latest','macos-11'] | |
| build_type: ['Release', 'Debug'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install optional dependencies | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt install gfortran swig python3-setuptools | |
| fi | |
| shell: bash | |
| - name: MacOS_xcode_select | |
| run: | | |
| if [ "$RUNNER_OS" != "Linux" ]; then | |
| xcode-select -p | |
| echo "1" | |
| ls /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib/ | |
| echo "2" | |
| ls /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/ | |
| echo "3" | |
| ls /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/libexec | |
| echo "4" | |
| sudo xcode-select --switch /Applications/Xcode_13.2.1.app | |
| fi | |
| shell: bash | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror | |
| else | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror -DWB_ENABLE_PYTHON=OFF | |
| fi | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb Linux and macOS | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} | |
| test_linux_non_unity_no_optional_dependencies: | |
| needs: test_indentation | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| build_type: ['Debug'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror -DWB_UNITY_BUILD=OFF | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb Linux and macOS | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} | |
| test_windows: | |
| needs: test_indentation | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['windows-2022'] | |
| build_type: ['Release', 'Debug'] | |
| build_system: ['Visual Studio 17 2022'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # python in combination with cmake seems to be broken on github actions windows | |
| # todo: fix it | |
| #- name: Install optional dependencies | |
| # run: choco install swig -version=4.0.1 -y | |
| # shell: bash | |
| - uses: ilammy/msvc-dev-cmd@v1 | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: cmake -G"${{ matrix.build_system }}" $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DWB_ENABLE_PYTHON=OFF -DWB_MAKE_FORTRAN_WRAPPER=OFF | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb windows | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} -E _no_coordinates | |
| test_linux_and_macos_mpi: | |
| needs: test_indentation | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest','macos-latest'] | |
| build_type: ['Release'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install optional dependencies | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt update; | |
| sudo apt install gfortran swig python3-setuptools openmpi-bin libopenmpi-dev | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| sudo brew install open-mpi || true | |
| echo "4" | |
| sudo xcode-select --switch /Applications/Xcode_13.2.1.app | |
| else | |
| echo "$RUNNER_OS not supported" | |
| exit 1 | |
| fi | |
| shell: bash | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror | |
| else | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror -DWB_ENABLE_PYTHON=OFF | |
| fi | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb Linux and macOS | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} | |
| coverage: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install optional dependencies | |
| run: sudo apt install gfortran swig python3-setuptools openmpi-bin libopenmpi-dev | |
| shell: bash | |
| - name: extend path | |
| run: echo $PATH && export PATH=$PATH:/home/runner/.local/bin && echo $PATH && export PYTHONPATH=$PYTHONPATH:/home/runner/.local/bin | |
| - name: Install coveralls | |
| run: pip install --user cpp-coveralls | |
| shell: bash | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=Coverage | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config Coverage | |
| - name: Install gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config Coverage | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: | | |
| ctest -VV -C Coverage; | |
| ls; | |
| - name: Codecov | |
| run: bash <(curl -s https://codecov.io/bash); | |
| shell: bash | |
| - name: lcov | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: | | |
| sudo apt install lcov; | |
| lcov --capture --directory ${{github.workspace}}/build --output-file coverage.info; | |
| lcov --remove coverage.info '${{github.workspace}}/build/*' '${{github.workspace}}/include/*' '${{github.workspace}}/tests/*' '/usr/*' -o coverage_filtered.info | |
| ls; | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: ${{github.workspace}}/build/coverage_filtered.info | |
| linux-cmake_mpi: | |
| needs: [test_indentation,coverage] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| cmake_version: ['2.8.12','3.16.x', '3.20.x'] | |
| use_mpi: ['TRUE','FALSE'] | |
| build_type: ['Release'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install optional dependencies | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt update; | |
| sudo apt install gfortran swig python3-setuptools openmpi-bin libopenmpi-dev | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| sudo brew install open-mpi || true | |
| else | |
| echo "$RUNNER_OS not supported" | |
| exit 1 | |
| fi | |
| shell: bash | |
| - name: Setup cmake | |
| uses: jwlawson/[email protected] | |
| with: | |
| cmake-version: ${{ matrix.cmake_version }} | |
| - name: Use cmake | |
| run: cmake --version | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror -DUSE_MPI=${{ matrix.use_mpi }}; | |
| cat ${{github.workspace}}/build/CMakeFiles/CMakeError.log ||:; | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb Linux and macOS | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} | |
| linux-gcc_mpi: | |
| needs: [test_indentation,coverage] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-20.04'] | |
| build_type: ['Debug'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install optional dependencies | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt update; | |
| sudo apt install gfortran swig python3-setuptools openmpi-bin | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| sudo brew install open-mpi || true | |
| else | |
| echo "$RUNNER_OS not supported" | |
| exit 1 | |
| fi | |
| shell: bash | |
| - name: CMake version | |
| run: cmake --version | |
| - name: GCC version | |
| run: gcc --version | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror; | |
| cat ${{github.workspace}}/build/CMakeFiles/CMakeError.log ||:; | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb Linux and macOS | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} | |
| linux-gdb-valgrind: | |
| needs: [test_indentation] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-22.04'] | |
| build_type: ['Debug'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install optional dependencies | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt update; | |
| sudo apt install gfortran swig python3-setuptools gdb valgrind | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| sudo brew install open-mpi || true | |
| else | |
| echo "$RUNNER_OS not supported" | |
| exit 1 | |
| fi | |
| shell: bash | |
| - name: CMake version | |
| run: cmake --version | |
| - name: GCC version | |
| run: gcc --version | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{github.workspace}}/build | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror -DWB_RUN_TESTS_WITH_GDB=ON -DWB_RUN_TESTS_WITH_VALGRIND=OFF; | |
| cat ${{github.workspace}}/build/CMakeFiles/CMakeError.log ||:; | |
| - name: Build gwb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: cmake --build . --config ${{ matrix.build_type }} | |
| - name: Install gwb Linux and macOS | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . --config ${{ matrix.build_type }} | |
| - name: Test gwb normal and gdb | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} -E _no_coordinates_gdb | |
| - name: Configure CMake | |
| shell: bash | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS=-Werror -DWB_RUN_TESTS_WITH_GDB=OFF -DWB_RUN_TESTS_WITH_VALGRIND=ON; | |
| cat ${{github.workspace}}/build/CMakeFiles/CMakeError.log ||:; | |
| - name: Test gwb valgrind | |
| working-directory: ${{github.workspace}}/build | |
| shell: bash | |
| run: ctest -VV -C ${{ matrix.build_type }} -R _valgrind -E _no_coordinates_valgrind | |