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AlphaFold losses #15

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@0x00b1 0x00b1 commented Apr 29, 2024 •
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Adds the following PyTorch modules:

  • beignet.nn.AlphaFoldLoss
  • beignet.nn.AngleNormLoss
  • beignet.nn.BondAngleViolationLoss
  • beignet.nn.BondLengthViolationLoss
  • beignet.nn.ClashLoss
  • beignet.nn.DistogramLoss
  • beignet.nn.ExperimentallyResolvedLoss
  • beignet.nn.FrameAlignedPointError
  • beignet.nn.MaskedMultipleSequenceAlignmentLoss
  • beignet.nn.PerResidueLocalDistanceDifferenceTest
  • beignet.nn.TemplateModelingScore
  • beignet.nn.TorsionAngleLoss
  • beignet.nn.ViolationLoss

Adds the following PyTorch functions:

  • beignet.nn.functional.alphafold_loss
  • beignet.nn.functional.angle_norm_loss
  • beignet.nn.functional.bond_angle_violation_loss
  • beignet.nn.functional.bond_length_violation_loss
  • beignet.nn.functional.clash_loss
  • beignet.nn.functional.distogram_loss
  • beignet.nn.functional.experimentally_resolved_loss
  • beignet.nn.functional.frame_aligned_point_error
  • beignet.nn.functional.masked_multiple_sequence_alignment_loss
  • beignet.nn.functional.per_residue_local_distance_difference_test
  • beignet.nn.functional.template_modeling_score
  • beignet.nn.functional.torsion_angle_loss
  • beignet.nn.functional.violation_loss

@0x00b1 0x00b1 temporarily deployed to test.pypi.org April 29, 2024 20:43 — with GitHub Actions Inactive
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@0x00b1 0x00b1 temporarily deployed to test.pypi.org May 1, 2024 15:36 — with GitHub Actions Inactive
@0x00b1 0x00b1 temporarily deployed to test.pypi.org May 1, 2024 19:55 — with GitHub Actions Inactive
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