cleanup

Genentech · May 13, 2024 · 1f1d283 · 1f1d283
1 parent 4ef55de
commit 1f1d283
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Showing 7 changed files with 6 additions and 9 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -31,7 +31,7 @@ exclude = [
     "./src/beignet/constants/_substitution_matrices.py",
 ]
 
-[tool.ruff]
+[tool.ruff.lint]
 select = [
     "B",  # FLAKE8-BUGBEAR
     "E",  # PYCODESTYLE ERRORS

diff --git a/src/beignet/__init__.py b/src/beignet/__init__.py
@@ -28,6 +28,7 @@
 from ._invert_quaternion import invert_quaternion
 from ._invert_rotation_matrix import invert_rotation_matrix
 from ._invert_rotation_vector import invert_rotation_vector
+from ._needleman_wunsch import needleman_wunsch
 from ._quaternion_identity import quaternion_identity
 from ._quaternion_magnitude import quaternion_magnitude
 from ._quaternion_mean import quaternion_mean
@@ -65,6 +66,7 @@
 from ._rotation_vector_to_rotation_matrix import (
     rotation_vector_to_rotation_matrix,
 )
+from ._smith_waterman import smith_waterman
 from ._translation_identity import translation_identity
 
 __all__ = [
@@ -86,9 +88,11 @@
     "invert_quaternion",
     "invert_rotation_matrix",
     "invert_rotation_vector",
+    "needleman_wunsch",
     "quaternion_identity",
     "quaternion_magnitude",
     "quaternion_mean",
+    "quaternion_slerp",
     "quaternion_to_euler_angle",
     "quaternion_to_rotation_matrix",
     "quaternion_to_rotation_vector",
@@ -108,6 +112,6 @@
     "rotation_vector_to_euler_angle",
     "rotation_vector_to_quaternion",
     "rotation_vector_to_rotation_matrix",
-    "quaternion_slerp",
+    "smith_waterman",
     "translation_identity",
 ]
diff --git a/src/beignet/operators/_needleman_wunsch.py → src/beignet/_needleman_wunsch.py b/src/beignet/operators/_needleman_wunsch.py → src/beignet/_needleman_wunsch.py
diff --git a/src/beignet/operators/_smith_waterman.py → src/beignet/_smith_waterman.py b/src/beignet/operators/_smith_waterman.py → src/beignet/_smith_waterman.py
diff --git a/src/beignet/operators/__init__.py b/src/beignet/operators/__init__.py
diff --git a/...ignet/operators/test__needleman_wunsch.py → tests/beignet/test__needleman_wunsch.py b/...ignet/operators/test__needleman_wunsch.py → tests/beignet/test__needleman_wunsch.py
diff --git a/...beignet/operators/test__smith_waterman.py → tests/beignet/test__smith_waterman.py b/...beignet/operators/test__smith_waterman.py → tests/beignet/test__smith_waterman.py