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+
+  <h1>Source code for galsim.config.extra_badpix</h1><div class="highlight"><pre>
+<span></span><span class="c1"># Copyright (c) 2012-2023 by the GalSim developers team on GitHub</span>
+<span class="c1"># https://github.com/GalSim-developers</span>
+<span class="c1">#</span>
+<span class="c1"># This file is part of GalSim: The modular galaxy image simulation toolkit.</span>
+<span class="c1"># https://github.com/GalSim-developers/GalSim</span>
+<span class="c1">#</span>
+<span class="c1"># GalSim is free software: redistribution and use in source and binary forms,</span>
+<span class="c1"># with or without modification, are permitted provided that the following</span>
+<span class="c1"># conditions are met:</span>
+<span class="c1">#</span>
+<span class="c1"># 1. Redistributions of source code must retain the above copyright notice, this</span>
+<span class="c1">#    list of conditions, and the disclaimer given in the accompanying LICENSE</span>
+<span class="c1">#    file.</span>
+<span class="c1"># 2. Redistributions in binary form must reproduce the above copyright notice,</span>
+<span class="c1">#    this list of conditions, and the disclaimer given in the documentation</span>
+<span class="c1">#    and/or other materials provided with the distribution.</span>
+<span class="c1">#</span>
+
+<span class="kn">from</span> <span class="nn">.extra</span> <span class="kn">import</span> <span class="n">ExtraOutputBuilder</span><span class="p">,</span> <span class="n">RegisterExtraOutput</span>
+<span class="kn">from</span> <span class="nn">..image</span> <span class="kn">import</span> <span class="n">ImageS</span>
+
+<span class="c1"># The badpix extra output type is currently just a placeholder for when we eventually add</span>
+<span class="c1"># defects, saturation, etc.  Now it always just builds an Image with all 0&#39;s.</span>
+
+<div class="viewcode-block" id="BadPixBuilder"><a class="viewcode-back" href="../../../config_output.html#galsim.config.extra_badpix.BadPixBuilder">[docs]</a><span class="k">class</span> <span class="nc">BadPixBuilder</span><span class="p">(</span><span class="n">ExtraOutputBuilder</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;This builds a bad pixel mask image to go along with each regular data image.</span>
+
+<span class="sd">    There&#39;s not much here currently, since GalSim doesn&#39;t yet have any image artifacts that</span>
+<span class="sd">    would be appropriate to do something with here.  So this is mostly just a placeholder for</span>
+<span class="sd">    when we eventually add defects, saturation, etc.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+    <span class="c1"># The function to call at the end of building each stamp</span>
+    <span class="k">def</span> <span class="nf">processStamp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj_num</span><span class="p">,</span> <span class="n">config</span><span class="p">,</span> <span class="n">base</span><span class="p">,</span> <span class="n">logger</span><span class="p">):</span>
+        <span class="c1"># Note: This is just a placeholder for now.  Once we implement defects, saturation, etc.,</span>
+        <span class="c1"># these features should be marked in the badpix mask.  For now though, all pixels = 0.</span>
+        <span class="k">if</span> <span class="n">base</span><span class="p">[</span><span class="s1">&#39;do_noise_in_stamps&#39;</span><span class="p">]:</span>
+            <span class="n">badpix_im</span> <span class="o">=</span> <span class="n">ImageS</span><span class="p">(</span><span class="n">base</span><span class="p">[</span><span class="s1">&#39;current_stamp&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">bounds</span><span class="p">,</span> <span class="n">wcs</span><span class="o">=</span><span class="n">base</span><span class="p">[</span><span class="s1">&#39;wcs&#39;</span><span class="p">],</span> <span class="n">init_value</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">scratch</span><span class="p">[</span><span class="n">obj_num</span><span class="p">]</span> <span class="o">=</span> <span class="n">badpix_im</span>
+
+    <span class="c1"># The function to call at the end of building each image</span>
+    <span class="k">def</span> <span class="nf">processImage</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">index</span><span class="p">,</span> <span class="n">obj_nums</span><span class="p">,</span> <span class="n">config</span><span class="p">,</span> <span class="n">base</span><span class="p">,</span> <span class="n">logger</span><span class="p">):</span>
+        <span class="n">image</span> <span class="o">=</span> <span class="n">ImageS</span><span class="p">(</span><span class="n">base</span><span class="p">[</span><span class="s1">&#39;image_bounds&#39;</span><span class="p">],</span> <span class="n">wcs</span><span class="o">=</span><span class="n">base</span><span class="p">[</span><span class="s1">&#39;wcs&#39;</span><span class="p">],</span> <span class="n">init_value</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">scratch</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mf">0.</span><span class="p">:</span>
+            <span class="c1"># If we have been accumulating the variance on the stamps, build the total from them.</span>
+            <span class="c1"># Make sure to only use the stamps for objects in this image.</span>
+            <span class="k">for</span> <span class="n">obj_num</span> <span class="ow">in</span> <span class="n">obj_nums</span><span class="p">:</span>
+                <span class="n">stamp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">scratch</span><span class="p">[</span><span class="n">obj_num</span><span class="p">]</span>
+                <span class="n">b</span> <span class="o">=</span> <span class="n">stamp</span><span class="o">.</span><span class="n">bounds</span> <span class="o">&amp;</span> <span class="n">image</span><span class="o">.</span><span class="n">bounds</span>
+                <span class="k">if</span> <span class="n">b</span><span class="o">.</span><span class="n">isDefined</span><span class="p">():</span>  <span class="c1"># pragma: no branch</span>
+                    <span class="c1"># This next line is equivalent to:</span>
+                    <span class="c1">#    image[b] |= stamp[b]</span>
+                    <span class="c1"># except that this doesn&#39;t work through the proxy.  We can only call methods</span>
+                    <span class="c1"># that don&#39;t start with _.  Hence using the more verbose form here.</span>
+                    <span class="n">image</span><span class="o">.</span><span class="n">setSubImage</span><span class="p">(</span><span class="n">b</span><span class="p">,</span> <span class="n">image</span><span class="o">.</span><span class="n">subImage</span><span class="p">(</span><span class="n">b</span><span class="p">)</span> <span class="o">|</span> <span class="n">stamp</span><span class="p">[</span><span class="n">b</span><span class="p">])</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="c1"># Otherwise, build the bad pixel mask here.</span>
+            <span class="c1"># Again, nothing here yet.</span>
+            <span class="k">pass</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">image</span></div>
+
+
+<span class="c1"># Register this as a valid extra output</span>
+<span class="n">RegisterExtraOutput</span><span class="p">(</span><span class="s1">&#39;badpix&#39;</span><span class="p">,</span> <span class="n">BadPixBuilder</span><span class="p">())</span>
+</pre></div>
+
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