Update oclif/test and oclif/core (#4445)

package.json

@@ -39,7 +39,8 @@
     "@mui/system": "^5.14.4",
     "@mui/x-data-grid": "^7.0.0",
     "@node-oauth/express-oauth-server": "^4.0.0",
-    "@oclif/test": "^3.2.1",
+    "@oclif/core": "^4.0.0",
+    "@oclif/test": "^4.0.0",
     "@pmmmwh/react-refresh-webpack-plugin": "^0.5.3",
     "@r2wc/react-to-web-component": "^2.0.3",
     "@storybook/addon-essentials": "^8.0.0",
@@ -91,7 +92,6 @@
     "browserslist": "^4.18.1",
     "canvas": "^2.9.1",
     "case-sensitive-paths-webpack-plugin": "^2.4.0",
-    "chai": "^4.3.4",
     "cors": "^2.8.5",
     "cross-env": "^7.0.2",
     "cross-spawn": "^7.0.1",
@@ -129,7 +129,7 @@
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.1.7",
-    "nock": "^13.2.1",
+    "nock": "^13.5.4",
     "npm-run-all": "^4.1.5",
     "oclif": "^4.0.0",
     "prettier": "^3.2.5",

products/jbrowse-cli/README.md

@@ -67,9 +67,9 @@ Add an assembly to a JBrowse 2 configuration
 
 ```
 USAGE
-  $ jbrowse add-assembly SEQUENCE [-t indexedFasta|bgzipFasta|twoBit|chromSizes|custom] [-n <value>] [-a <value>]
-    [--displayName <value>] [--faiLocation <value>] [--gziLocation <value>] [--refNameAliasesType aliases|custom
-    --refNameAliases <value>] [--refNameColors <value>] [--target <value>] [--out <value>] [-h] [-l
+  $ jbrowse add-assembly SEQUENCE [-t indexedFasta|bgzipFasta|twoBit|chromSizes|custom] [-n <value>] [-a
+    <value>...] [--displayName <value>] [--faiLocation <value>] [--gziLocation <value>] [--refNameAliasesType
+    aliases|custom --refNameAliases <value>] [--refNameColors <value>] [--target <value>] [--out <value>] [-h] [-l
     copy|symlink|move|inPlace] [--skipCheck] [--overwrite] [-f]
 
 ARGUMENTS
@@ -477,7 +477,7 @@ DESCRIPTION
 ```
 
 _See code:
-[@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.0.22/src/commands/help.ts)_
+[@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.2.3/src/commands/help.ts)_
 
 ## `jbrowse make-pif FILE`
 
@@ -608,8 +608,8 @@ Make a text-indexing file for any given track(s).
 ```
 USAGE
   $ jbrowse text-index [-h] [--tracks <value>] [--target <value>] [--out <value>] [--attributes <value>] [-a
-    <value>] [--force] [-q] [--perTrack] [--exclude <value>] [--prefixSize <value>] [--file <value>] [--fileId <value>]
-    [--dryrun]
+    <value>] [--force] [-q] [--perTrack] [--exclude <value>] [--prefixSize <value>] [--file <value>...] [--fileId
+    <value>...] [--dryrun]
 
 FLAGS
   -a, --assemblies=<value>  Specify the assembl(ies) to create an index for. If unspecified, creates an index for each

products/jbrowse-cli/package.json

@@ -45,7 +45,7 @@
     "docs:version:add": "git add README.md"
   },
   "dependencies": {
-    "@oclif/core": "^3.22.0",
+    "@oclif/core": "^4.0.6",
     "@oclif/plugin-help": "^6.0.15",
     "boxen": "^4.2.0",
     "chalk": "^4.1.0",