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Fixed format test

Fixed format test #470

Workflow file for this run

on:
pull_request:
types: [opened, reopened, synchronize, edited]
workflow_dispatch:
jobs:
build:
runs-on: ubuntu-latest
name: process_test
steps:
- name: Install Python
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Checkout repo
uses: actions/checkout@v3
with:
path: "main"
token: ${{ secrets.GITHUB_TOKEN }}
- name: Install dependencies
shell: bash
run: |
python -m pip install --upgrade pip
pip install wheel
python3 -m pip install --upgrade setuptools
cd $GITHUB_WORKSPACE/main
pip install .
- name: Clone AWS Level 0 data repo for testing
env:
GITLAB_TOKEN : ${{ secrets.GITLAB_TOKEN }}
run: |
cd $GITHUB_WORKSPACE
git clone --depth 1 https://oauth2:${{ env.GITLAB_TOKEN }}@geusgitlab.geus.dk/glaciology-and-climate/promice/aws-l0.git
- name: Run L0 to L2 processing
env:
TEST_STATION: KAN_U HUM
shell: bash
run: |
mkdir $GITHUB_WORKSPACE/out/
mkdir $GITHUB_WORKSPACE/out/L0toL2/
mkdir $GITHUB_WORKSPACE/data_issues
for i in $(echo ${{ env.TEST_STATION }} | tr ' ' '\n'); do
python3 $GITHUB_WORKSPACE/main/src/pypromice/process/get_l2.py -c $GITHUB_WORKSPACE/aws-l0/tx/config/$i.toml -i $GITHUB_WORKSPACE/aws-l0/tx --issues $GITHUB_WORKSPACE/data_issues -o $GITHUB_WORKSPACE/out/L0toL2/ --data_issues_path $GITHUB_WORKSPACE/data_issues
done
- name: Run L2 to L3 processing
env:
TEST_STATION: KAN_U HUM
shell: bash
run: |
mkdir $GITHUB_WORKSPACE/out/L2toL3/
for i in $(echo ${{ env.TEST_STATION }} | tr ' ' '\n'); do
echo ${i}_hour.nc
python3 $GITHUB_WORKSPACE/main/src/pypromice/process/get_l2tol3.py -c $GITHUB_WORKSPACE/aws-l0/metadata/station_configurations/ -i $GITHUB_WORKSPACE/out/L0toL2/${i}/${i}_hour.nc -o $GITHUB_WORKSPACE/out/L2toL3/ --data_issues_path $GITHUB_WORKSPACE/data_issues
done
- name: Upload test output
uses: actions/upload-artifact@v3
with:
name: result
path: out