improved extraction of instantaneous values from raw files #447
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| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize, edited] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| name: process_test | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| path: "main" | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install wheel | |
| python3 -m pip install --upgrade setuptools | |
| cd $GITHUB_WORKSPACE/main | |
| pip install . | |
| - name: Clone AWS Level 0 data repo for testing | |
| env: | |
| GITLAB_TOKEN : ${{ secrets.GITLAB_TOKEN }} | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| git clone --depth 1 https://oauth2:${{ env.GITLAB_TOKEN }}@geusgitlab.geus.dk/glaciology-and-climate/promice/aws-l0.git | |
| - name: Run L0 to L2 processing | |
| env: | |
| TEST_STATION: KAN_U HUM | |
| shell: bash | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/out/ | |
| mkdir $GITHUB_WORKSPACE/out/L0toL2/ | |
| mkdir $GITHUB_WORKSPACE/data_issues | |
| for i in $(echo ${{ env.TEST_STATION }} | tr ' ' '\n'); do | |
| python3 $GITHUB_WORKSPACE/main/src/pypromice/process/get_l2.py -c $GITHUB_WORKSPACE/aws-l0/tx/config/$i.toml -i $GITHUB_WORKSPACE/aws-l0/tx --issues $GITHUB_WORKSPACE/data_issues -o $GITHUB_WORKSPACE/out/L0toL2/ --data_issues_path $GITHUB_WORKSPACE/data_issues | |
| done | |
| - name: Run L2 to L3 processing | |
| env: | |
| TEST_STATION: KAN_U HUM | |
| shell: bash | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/out/L2toL3/ | |
| for i in $(echo ${{ env.TEST_STATION }} | tr ' ' '\n'); do | |
| echo ${i}_hour.nc | |
| python3 $GITHUB_WORKSPACE/main/src/pypromice/process/get_l2tol3.py -c $GITHUB_WORKSPACE/aws-l0/metadata/station_configurations/ -i $GITHUB_WORKSPACE/out/L0toL2/${i}/${i}_hour.nc -o $GITHUB_WORKSPACE/out/L2toL3/ --data_issues_path $GITHUB_WORKSPACE/data_issues | |
| done | |
| - name: Upload test output | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: result | |
| path: out |