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@FischbachLab

Fischbach Lab

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  1. ninjaMap ninjaMap Public

    Compute strain abundance in a defined microbial community

    Python 9 2

  2. nf-reads-profiler nf-reads-profiler Public

    Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.

    Nextflow 4 1

  3. nf-ninjamap nf-ninjamap Public

    ninjamap pipeline in nextflow

    Python 3 2

  4. nf-blast nf-blast Public

    Blast tools using Nextflow on AWS Batch using database on a shared file system.

    Nextflow 1

  5. nf-hybridassembly nf-hybridassembly Public

    Hybrid assembly pipeline in nextflow

    Shell 1

  6. nf-cctyper nf-cctyper Public

    Nextflow 1

Repositories

Showing 10 of 34 repositories
  • nf-readqc Public
    FischbachLab/nf-readqc’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Dec 17, 2024
  • nf-ninjamap Public

    ninjamap pipeline in nextflow

    FischbachLab/nf-ninjamap’s past year of commit activity
    Python 3 GPL-3.0 2 1 0 Updated Dec 16, 2024
  • nf-eggnog Public
    FischbachLab/nf-eggnog’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 14, 2024
  • nf-basespace Public
    FischbachLab/nf-basespace’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 3, 2024
  • nf-phylogenetic-tree Public

    Build a phylogenetic tree from the full length 16S sequences

    FischbachLab/nf-phylogenetic-tree’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Nov 21, 2024
  • nf-dsqc Public

    Drug Substance QC pipeline

    FischbachLab/nf-dsqc’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • pub_djenet_sepi Public

    Discovery and engineering of the antibody response against a prominent skin commensal

    FischbachLab/pub_djenet_sepi’s past year of commit activity
    Roff 0 0 0 0 Updated Nov 19, 2024
  • nf-binqc Public

    Bin QC

    FischbachLab/nf-binqc’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Nov 13, 2024
  • nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    FischbachLab/nanoseq’s past year of commit activity
    Nextflow 0 MIT 83 0 0 Updated Nov 12, 2024
  • nf-hybridassembly Public

    Hybrid assembly pipeline in nextflow

    FischbachLab/nf-hybridassembly’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Nov 2, 2024
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