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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,133 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "type": "object", | ||
| "oneOf": [ | ||
| { | ||
| "type": "object", | ||
| "properties": { | ||
| "parcellation_id": { | ||
| "type": "string" | ||
| }, | ||
| "region_mapping": { | ||
| "$ref": "urn:siibra-local:siibra/attr/util/region_mapping/v0.1.json" | ||
| } | ||
| }, | ||
| "required": ["parcellation_id", "region_mapping"], | ||
| "additionalProperties": false | ||
| }, | ||
| { | ||
| "type": "object", | ||
| "properties": { | ||
| "ref_type": { | ||
| "$ref": "#/definitions/ebrainsref_type" | ||
| }, | ||
| "refs": { | ||
| "$ref": "#/definitions/ebrainsref_mapping" | ||
| } | ||
| } | ||
| } | ||
| ], | ||
| "properties": { | ||
| "@type": { | ||
| "const": "siibra/attr/desc/attribute_mapping/v0.1" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "@type" | ||
| ], | ||
| "examples": [ | ||
| { | ||
| "@type": "siibra/attr/desc/attribute_mapping/v0.1", | ||
| "parcellation_id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-300", | ||
| "region_mappings": { | ||
| "Area 45 (IFG) - left hemisphere": [ | ||
| { | ||
| "@type": "volume/ref", | ||
| "label": 1, | ||
| "target": "Left hemisphere volume of Julich Brain 3.0.3 in ICBM 152 space", | ||
| "color": "#A76792" | ||
| } | ||
| ], | ||
| "Area 45 (IFG) - right hemisphere": [ | ||
| { | ||
| "@type": "volume/ref", | ||
| "label": 1, | ||
| "target": "Right hemisphere volume of Julich Brain 3.0.3 in ICBM 152 space", | ||
| "color": "#A76792" | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "@type": "siibra/attr/desc/attribute_mapping/v0.1", | ||
| "parcellation_id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-300", | ||
| "region_mappings": { | ||
| "Area 45 (IFG) - left hemisphere": [ | ||
| { | ||
| "@type": "csv/row-index", | ||
| "index": 0 | ||
| } | ||
| ], | ||
| "Area 44 (IFG) - left hemisphere": [ | ||
| { | ||
| "@type": "csv/row-index", | ||
| "index": 1 | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "@type": "siibra/attr/desc/attribute_mapping/v0.1", | ||
| "ref_type": "openminds/DatasetVersion", | ||
| "refs": { | ||
| "cb40a501-b155-4c2f-8df3-0ee7c5f1ed00": [ | ||
| { | ||
| "target": "Detailed map of VTM (Amygdala) - left hemisphere in Julich Brain in Big Brain" | ||
| }, | ||
| { | ||
| "target": "Detailed map of VTM (Amygdala) - right hemisphere in Julich Brain in Big Brain" | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| ], | ||
| "definitions": { | ||
| "ebrainsref_type": { | ||
| "oneOf": [ | ||
| { | ||
| "const": "openminds/DatasetVersion" | ||
| }, | ||
| { | ||
| "const": "openminds/Dataset" | ||
| }, | ||
| { | ||
| "const": "openminds/AtlasAnnotation" | ||
| }, | ||
| { | ||
| "const": "minds/core/dataset/v1.0.0" | ||
| } | ||
| ] | ||
| }, | ||
| "ebrainsref_mapping": { | ||
| "type": "object", | ||
| "properties": { | ||
| "refs": { | ||
| "type": "object", | ||
| "patternProperties": { | ||
| "^[0-9a-f-]+$": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "target": { | ||
| "type": "string" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,143 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-07/schema#", | ||
| "type": "object", | ||
| "patternProperties": { | ||
| "^.*$": { | ||
| "type": "array", | ||
| "items": { | ||
| "$ref": "#/definitions/region-mapping-target" | ||
| } | ||
| } | ||
| }, | ||
| "description": "Describes how a subset of regions in a parcellation scheme connects to other attributes. At the moment, labelled volume mapping, statistical volume linking, and csv/row-index can be described. \n\nPlease note that this schema is not meant to be standalone, as the parcellation_id is deliberately not included. The parent node should contain parcellation_id.", | ||
| "examples": [ | ||
| { | ||
| "Area 45 (IFG) - left hemisphere": [ | ||
| { | ||
| "@type": "volume/ref", | ||
| "label": 1, | ||
| "target": "Left hemisphere volume of Julich Brain 3.0.3 in ICBM 152 space", | ||
| "color": "#A76792" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "Area 45 (IFG) - left hemisphere": [ | ||
| { | ||
| "@type": "volume/ref", | ||
| "range": [0, 0.98], | ||
| "target": "Statistical map of Area 45 (IFG) - left hemisphere in ICBM 152 space" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "Component 3: Calcarine cortex posterior": [ | ||
| { | ||
| "@type": "volume/ref", | ||
| "subspace": [ | ||
| ":", | ||
| ":", | ||
| ":", | ||
| 2 | ||
| ], | ||
| "range": [], | ||
| "target": "DiFuMo Atlas (64 dimensions) on MNI 152 ICBM 2009c Nonlinear Asymmetric - statistical - 32 regions" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "Area 45 (IFG) - left hemisphere": [ | ||
| { | ||
| "@type": "csv/row-index", | ||
| "index": 0 | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "definitions": { | ||
| "target_protocol": { | ||
| "type": "object", | ||
| "properties": { | ||
| "target": { | ||
| "type": "string" | ||
| } | ||
| } | ||
| }, | ||
| "region-mapping-target": { | ||
| "type": "object", | ||
| "allOf": [ | ||
| { | ||
| "$ref": "#/definitions/target_protocol" | ||
| } | ||
| ], | ||
| "oneOf": [ | ||
| { | ||
| "$ref": "#/definitions/volume" | ||
| }, | ||
| { | ||
| "$ref": "#/definitions/row-index" | ||
| } | ||
| ] | ||
| }, | ||
| "volume": { | ||
| "type": "object", | ||
| "oneOf": [ | ||
| { | ||
| "type": "object", | ||
| "properties": { | ||
| "label": { | ||
| "type": "number" | ||
| }, | ||
| "color": { | ||
| "type": "string", | ||
| "pattern": "#[a-fA-F0-9]{6}" | ||
| } | ||
| }, | ||
| "required": ["label"] | ||
| }, | ||
| { | ||
| "type": "object", | ||
| "properties": { | ||
| "range": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "number" | ||
| } | ||
| }, | ||
| "subspace": { | ||
| "type": "array", | ||
| "items": { | ||
| "anyOf": [ | ||
| { | ||
| "const": ":" | ||
| }, | ||
| { | ||
| "type": "number" | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| }, | ||
| "required": ["range"] | ||
| } | ||
| ], | ||
| "properties": { | ||
| "@type": { | ||
| "const": "volume/ref" | ||
| } | ||
| }, | ||
| "required": ["@type"] | ||
| }, | ||
| "row-index": { | ||
| "type": "object", | ||
| "properties": { | ||
| "@type": { | ||
| "const": "csv/row-index" | ||
| }, | ||
| "index": { | ||
| "type": "number" | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |