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@EnvGen

Environmental Genomics Group SciLifeLab/KTH Stockholm

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  1. DEGEPRIME DEGEPRIME Public

    Forked from andand/DEGEPRIME

    A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies

    Perl 30 7

  2. metagenomics-workshop metagenomics-workshop Public

    Forked from alneberg/metagenomics-workshop

    Metagenomics Workshop

    Python 28 36

  3. snakemake-workflows snakemake-workflows Public

    Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.

    Python 21 6

  4. toolbox toolbox Public

    Various scripts used at the EnvGen group, directed towards metagenomic analysis.

    Python 14 2

  5. LabProtocols LabProtocols Public

    The Environmental Genomic Group also does lab work. This is how we do it.

    12 6

  6. POGENOM POGENOM Public

    Population genomics from metagenomes

    Perl 11 4

Repositories

Showing 10 of 31 repositories
  • phyloBOTL Public

    Phylogeny-based Ortholog-trait Linkage pipeline

    EnvGen/phyloBOTL’s past year of commit activity
    Python 0 0 0 0 Updated Dec 26, 2024
  • EnvGen/Degprimer_design’s past year of commit activity
    Python 0 1 0 0 Updated Oct 9, 2024
  • POGENOM Public

    Population genomics from metagenomes

    EnvGen/POGENOM’s past year of commit activity
    Perl 11 BSD-2-Clause 4 8 0 Updated Sep 1, 2024
  • mix_assembly_pipeline Public

    Mix_assembly gene catalog pipeline

    EnvGen/mix_assembly_pipeline’s past year of commit activity
    Python 2 0 0 0 Updated Apr 5, 2024
  • Gene_Catalog_Rshiny Public Forked from lfdelzam/Gene_Catalog_Rshiny

    Rshiny app - Gene catalog using mix-assembly approach

    EnvGen/Gene_Catalog_Rshiny’s past year of commit activity
    HTML 0 2 0 0 Updated Mar 28, 2024
  • B1-Ocean Public
    EnvGen/B1-Ocean’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 4, 2024
  • envgen.github.io Public

    The Environmental Genomics Home Page

    EnvGen/envgen.github.io’s past year of commit activity
    HTML 0 2 0 0 Updated Feb 12, 2024
  • EnvGen/Degprimer_specificity’s past year of commit activity
    Python 0 1 0 0 Updated Dec 20, 2023
  • DEGEPRIME Public Forked from andand/DEGEPRIME

    A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies

    EnvGen/DEGEPRIME’s past year of commit activity
    Perl 30 11 0 0 Updated Jun 9, 2023
  • euk_popgen Public

    collaborative scripting forn the euk_popgen project

    EnvGen/euk_popgen’s past year of commit activity
    R 0 1 0 0 Updated Nov 9, 2022

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