Tested/udpated examples, updated shell imports to add CommonQueroies,

Fixed a bug in API mapping xml for all versions exception API19, need to
rebuild plugin still

toolbox.analysis/src/toolbox/analysis/Example0.java

@@ -14,24 +14,20 @@
 public class Example0 {
 
 	/**
-	 * Given an Android project in the workspace, this method applies the nearest permission mapping (rounding up if need be)
-	 * to the target SDK version of the specified Android Eclipse project.
+	 * This method applies the nearest permission mapping (rounding up if need be) to the requested SDK version.
 	 * Note: If the permission mapping is unsuccessful, Atlas Jar indexing may be disable.  Enabling Jar indexing is required.
 	 * @param projectName An Eclipse project name of an Android application in the workspace to analyze
 	 * @return True if the permission mapping was successfully applied, false otherwise
 	 * @throws Exception Exception in the event that AndroidManifest.xml files is missing or corrupt
 	 */
-	public static boolean applyApplicationTargetSDKPermissionMapping(String projectName) throws Exception {
-		// parse the manifest for the target sdk version
-		Manifest manifest = new Manifest(Manifest.getManifestFile(projectName));
-		int targetSDKVersion = manifest.getTargetSDKVersion();
+	public static boolean applySDKPermissionMapping(int sdkVersion) throws Exception {
 		// check if the permission mapping has already been applied
-		String tagPrefix = PermissionMapping.getTagPrefix(targetSDKVersion);
+		String tagPrefix = PermissionMapping.getTagPrefix(sdkVersion);
 		if(!CommonQueries.nodesStartingWith(tagPrefix).eval().nodes().isEmpty()){
 			return true; // permission mapping has already been applied
 		}
 		// need to apply permission mapping
-		HashMap<Permission, AtlasHashSet<GraphElement>> permissionMapping = PermissionMapping.applyTags(targetSDKVersion);
+		HashMap<Permission, AtlasHashSet<GraphElement>> permissionMapping = PermissionMapping.applyTags(sdkVersion);
 		// permission mapping is successful if for at least one permission, a tag was applied to the graph
 		boolean success = false;
 		for(Entry<Permission, AtlasHashSet<GraphElement>> mapping : permissionMapping.entrySet()){
@@ -43,4 +39,16 @@ public static boolean applyApplicationTargetSDKPermissionMapping(String projectN
 		return success;
 	}
 
+	/**
+	 * 
+	 * @param projectName An Eclipse project name of an Android application in the workspace to analyze
+	 * @return The applications target sdk version
+	 * @throws Exception Exception in the event that AndroidManifest.xml files is missing or corrupt
+	 */
+	public static int getApplicationTargetSDKVersion(String projectName) throws Exception {
+		// parse the manifest for the target sdk version
+		Manifest manifest = new Manifest(Manifest.getManifestFile(projectName));
+		return manifest.getTargetSDKVersion();
+	}
+
 }

toolbox.android.essentials/src/toolbox/android/essentials/permissions/mappings/API10.xml

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<<!-- API level: 10, version: 2.3.3, code name: Gingerbread -->
+<!-- API level: 10, version: 2.3.3, code name: Gingerbread -->
 <permissions>
   <permission name="android.permission.CHANGE_WIFI_STATE">
     <call>

toolbox.android.essentials/src/toolbox/android/essentials/permissions/mappings/API13.xml

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<<!-- API level: 13, version: 3.2, code name: Honeycomb -->
+<!-- API level: 13, version: 3.2, code name: Honeycomb -->
 <permissions>
   <permission name="android.permission.CHANGE_WIFI_STATE">
     <call>

toolbox.android.essentials/src/toolbox/android/essentials/permissions/mappings/API14.xml

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<<!-- API level: 14, version: 4.0, code name: Ice Cream Sandwich-->
+<!-- API level: 14, version: 4.0, code name: Ice Cream Sandwich-->
 <permissions>
   <permission name="android.permission.CHANGE_WIFI_STATE">
     <call>

toolbox.android.essentials/src/toolbox/android/essentials/permissions/mappings/API16.xml

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<<!-- API level: 16, version: 4.1.2, code name: Jelly Bean -->
+<!-- API level: 16, version: 4.1.2, code name: Jelly Bean -->
 <permissions>
   <permission name="android.permission.CHANGE_WIFI_STATE">
     <call>

toolbox.android.essentials/src/toolbox/android/essentials/permissions/mappings/API8.xml

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<<!-- API level: 8, version: 2.2, code name: Froyo -->
+<!-- API level: 8, version: 2.2, code name: Froyo -->
 <permissions>
   <permission name="android.permission.CHANGE_WIFI_STATE">
     <call>

toolbox.shell/shellInit.scala

@@ -11,8 +11,12 @@ import com.ensoftcorp.atlas.core.query.Q
 import com.ensoftcorp.atlas.core.query.Attr
 import com.ensoftcorp.atlas.core.query.Attr.Edge
 import com.ensoftcorp.atlas.core.query.Attr.Node
+import com.ensoftcorp.atlas.core.script.Common
 import com.ensoftcorp.atlas.core.script.Common._
+import com.ensoftcorp.atlas.ui.shell.lib.Common
 import com.ensoftcorp.atlas.ui.shell.lib.Common._
+import com.ensoftcorp.atlas.core.script.CommonQueries
+import com.ensoftcorp.atlas.core.script.CommonQueries._
 import com.ensoftcorp.atlas.core.db.Accuracy._
 import com.ensoftcorp.atlas.core.db.graph.Graph