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@pchaumeil pchaumeil released this 29 Aug 00:00
· 783 commits to master since this release
  • GTDB-Tk is now using archived (.gz) fna files.
  • Optimised for R86 version
  • summary.tsv file is now the main output file.
  • fastani.tsv file is now combined with summary.tsv.
  • red_value.tsv file has been removed.
  • Each Pplacer placement on a species branch is now verify by FastANI and the ANI is compared with all other species in the same genus to check Pplacer accuracy.
  • New functionality: "trim_msa" allows to trim an untrimmed MSA (41155AA for bac120 and 32675AA for ar122) based on GTDB-Tk masks