Merge remote-tracking branch 'origin/fix-citation-file'

.github/workflows/cffconvert.yml

@@ -17,7 +17,7 @@ jobs:
     name: "cffconvert"
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         name: Check out a copy of the repository
 
       - uses: citation-file-format/cffconvert-github-action@main

.github/workflows/release_github.yml

@@ -71,6 +71,12 @@ jobs:
               --generate-notes \
               --draft
 
+      - name: Validate CITATION.cff
+        id: validate_cff
+        env:
+          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+        uses: dieghernan/cff-validator@v3
+
   tidy_workspace:
     # only run if action above succeeds
     needs: github_release

CITATION.cff

@@ -1,6 +1,6 @@
 # YAML 1.2
 ---
-cff-version: "1.4.3"
+cff-version: 1.2.0
 title: "eitprocessing"
 authors:
   - family-names: Bodor
@@ -29,20 +29,20 @@ authors:
 
   - family-names: Wisse-Smit
     given-names: Jantine
-    email: [email protected]
+    email: [email protected]
     affiliation: Erasmus MC
-    orcid: "https://orcid.org/0000-0000-0000-0000"
+    orcid: "https://orcid.org/0009-0006-6552-5459"
 
   - family-names: Francovich
     given-names: Juliette
-    email: [email protected]
+    email: [email protected]
     affiliation: Erasmus MC
-    orcid: "https://orcid.org/0000-0000-0000-0000"
+    orcid: "https://orcid.org/0009-0004-0976-5082"
 
 date-released: 2023-03-23
 doi: 10.5281/zenodo.7869553
 version: "1.4.3"
-repository-code: "git@github.com:EIT-ALIVE/eitprocessing"
+repository-code: "https://github.com/EIT-ALIVE/eitprocessing"
 keywords:
   - Mechanical lung ventilation
   - Electrical impedance tomography

pyproject.toml

@@ -129,12 +129,12 @@ ignore = [
     "B028",   # No explicit `stacklevel` keyword argument found in warning
     # "SIM108", # Use ternary operator (not sure if we want to ignore this)
     # Unneeded docstrings
-    "D100", # Missing module docstring
-    "D104", # Missing public package docstring
-    "D105", # Missing docstring in magic method
-    "D107", # Missing docstring in `__init__`
+    "D100",   # Missing module docstring
+    "D104",   # Missing public package docstring
+    "D105",   # Missing docstring in magic method
+    "D107",   # Missing docstring in `__init__`
     "COM812", # missing trailing comma
-    "ISC001"  # single line implicit string concatenation
+    "ISC001", # single line implicit string concatenation
 ]
 
 # Set autofixing.
@@ -162,8 +162,16 @@ flake8-tidy-imports.ban-relative-imports = "all" # Disallow all relative imports
 isort.known-first-party = ["eitprocessing"]
 
 [tool.ruff.lint.per-file-ignores]
-"*.ipynb" = ["ERA001", "T201", "T203"] # Commented out code, print() / pprint() statement
-"notebooks/**/*.py" = ["ERA001", "T201", "T203"] # Commented out code, print() / pprint() statement
+"*.ipynb" = [
+    "ERA001",
+    "T201",
+    "T203",
+] # Commented out code, print() / pprint() statement
+"notebooks/**/*.py" = [
+    "ERA001",
+    "T201",
+    "T203",
+] # Commented out code, print() / pprint() statement
 "tests/*" = [
     "S101",    # Use of `assert` detected
     "ANN201",  # Missing return type
@@ -178,9 +186,15 @@ current_version = "1.4.3"
 
 [[tool.bumpversion.files]]
 filename = "pyproject.toml"
+search = 'version = "{current_version}"'
+replace = 'version = "{new_version}"'
 
 [[tool.bumpversion.files]]
 filename = "CITATION.cff"
+search = 'version: "{current_version}"'
+replace = 'version: "{new_version}"'
 
 [[tool.bumpversion.files]]
 filename = "eitprocessing/__init__.py"
+search = '__version__ = "{current_version}"'
+replace = '__version__ = "{new_version}"'