Create composite action for installing eitprocessing

.github/actions/install_eitprocessing/action.yml

@@ -0,0 +1,47 @@
+name: Install eitprocessing
+description: Install eitprocessing on the given Python version.
+inputs:
+  python-version:
+    description: "The Python version to use"
+    required: false
+    default: "3.10"
+  dependencies:
+    description: "The optional dependencies of eitprocessing to install"
+    required: false
+  extract-data: 
+    description: "Whether to extract testing data"
+    required: false
+    default: "false"
+  token:
+    description: "GitHub TOKEN"
+    required: true
+  data-directory:
+    description: "Directory where to store eitprocessing data"
+    required: false
+    default: ${{ github.workspace }}/../eitprocessing_data/
+
+runs:
+  using: 'composite'
+  steps:
+    - uses: actions/setup-python@v2
+      with:
+        python-version: ${{ inputs.python-version }}
+    - uses: docker/[email protected]
+      if: ${{ inputs.extract-data == "true" }}
+      with:
+        registry: ghcr.io
+        username: psomhorst
+        password: ${{ inputs.token }}
+    - uses: shrink/actions-docker-extract@v3
+      if: ${{ inputs.extract-data == "true" }}
+      with:
+        image: ghcr.io/eit-alive/eittestdata:latest
+        destination: ${{ inputs.data-directory }}
+        path: /eitprocessing/.
+    - name: Install eitprocessing with ${{ inputs.dependencies }} dependencies
+      run: python3 -m pip install ".[${{ inputs.dependencies }}]"
+      shell: bash
+
+
+
+

.github/workflows/build.yml

@@ -29,23 +29,13 @@ jobs:
       EIT_PROCESSING_TEST_DATA: ${{ github.workspace }}/../eitprocessing_data/
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+      - uses: ./.github/actions/install_eitprocessing
         with:
+          dependencies: testing
+          extract-data: true
           python-version: ${{ matrix.python-version }}
-      - name: Connect to Container Registry
-        uses: docker/[email protected]
-        with:
-          registry: ghcr.io
-          username: psomhorst
-          password: ${{ secrets.GITHUB_TOKEN }}
-      - name: Extract data from image
-        uses: shrink/actions-docker-extract@v3
-        with: 
-          image: ghcr.io/eit-alive/eittestdata:latest
-          destination: $EIT_PROCESSING_TEST_DATA
-          path: /eitprocessing/.
-      - name: Install eitprocessing with testing dependencies
-        run: python3 -m pip install ".[testing]"
+          os: ${{ matrix.os }}
+          token: ${{ secrets.GITHUB_TOKEN }}
+          data-directory: ${{ env.EIT_PROCESSING_TEST_DATA }}
       - name: Run pytest
         run: pytest -v

.github/workflows/coverage.yml

@@ -22,24 +22,13 @@ jobs:
       COVERALLS_FLAG_NAME: python-${{ matrix.python-version }}
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+      - uses: ./.github/actions/install_eitprocessing
         with:
+          dependencies: testing
+          extract-data: true
           python-version: ${{ matrix.python-version }}
-      - name: Connect to Container Registry
-        uses: docker/[email protected]
-        with:
-          registry: ghcr.io
-          username: psomhorst
-          password: ${{ secrets.GITHUB_TOKEN }}
-      - name: Extract data from image
-        uses: shrink/actions-docker-extract@v3
-        with: 
-          image: ghcr.io/eit-alive/eittestdata:latest
-          destination: $EIT_PROCESSING_TEST_DATA
-          path: /eitprocessing/.
-      - name: Install eitprocessing
-        run: python3 -m pip install ".[testing]"
+          token: ${{ secrets.GITHUB_TOKEN }}
+          data-directory: ${{ env.EIT_PROCESSING_TEST_DATA }}
       - name: Run coveralls
         run: |
           pytest --cov --cov-report xml --cov-report term --cov-report html 

.github/workflows/release_github.yml

@@ -25,28 +25,18 @@ jobs:
         os: ["ubunt-latest"]
         python-version: ["3.10", "3.11", "3.12", "3.13"]
     name: Build for ${{ matrix.python-version }}, ${{ matrix.os }}
+    env: 
+      EIT_PROCESSING_TEST_DATA: ${{ github.workspace }}/../eitprocessing_data/
     steps:
       - uses: actions/checkout@v4
-      - name: Connect to container registry
-        uses: docker/[email protected]
-        with: 
-          registry: ghcr.io
-          username: psomhorst
-          password: ${{ secrets.GITHUB_TOKEN }}
-      - name: Connect to Container Registry
-        uses: docker/[email protected]
+      - uses: ./.github/actions/install_eitprocessing
         with:
-          registry: ghcr.io
-          username: psomhorst
-          password: ${{ secrets.GITHUB_TOKEN }}
-      - name: Extract data from image
-        uses: shrink/actions-docker-extract@v3
-        with: 
-          image: ghcr.io/eit-alive/eittestdata:latest
-          destination: $EIT_PROCESSING_TEST_DATA
-          path: /eitprocessing/.
-      - name: Install eitprocessing with testing dependecies
-        run: python3 -m pip install ".[testing]"
+          dependencies: testing
+          extract-data: true
+          python-version: ${{ matrix.python-version }}
+          os: ${{ matrix.os }}
+          token: ${{ secrets.GITHUB_TOKEN }}
+          data-directory: ${{ env.EIT_PROCESSING_TEST_DATA }}
       - name: Run pytest
         run: pytest -v
       - name: Install eitprocessing with dev dependencies

.github/workflows/release_pypi.yml

@@ -13,12 +13,11 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v3
+      - uses: ./.github/actions/install_eitprocessing
         with:
+          dependencies: publishing
+          extract-data: false
           python-version: "3.10"
-      - name: Install package
-        run: pip install ."[publishing]"
       - name: Build wheel and source distribution
         run: python -m build
       - uses: actions/upload-artifact@v4

.github/workflows/test_build_documentation.yml

@@ -22,12 +22,11 @@ jobs:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 0
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v2
-        with: 
+      - uses: ./.github/actions/install_eitprocessing
+        with:
+          dependencies: docs
+          extract-data: false
           python-version: "3.10"
-      - name: Install eitprocessing with docs dependencies
-        run: python3 -m pip install .[docs]
       - name: Build documentation
         run: mkdocs build
       - name: Deploy documentation