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24 Open 41 Closed
24 Open 41 Closed
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Issues list

Why would max_min_anc be larger than half of read length?
#66 opened Sep 13, 2024 by ritetsu
terminate called after throwing an instance of 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value> >' ') for option '--input-file' is invalid
#65 opened Mar 10, 2023 by pameyaw
I have two files that are not created when the command is restarting (portcullis.junctions.tab , portcullis.junctions.bed )
#64 opened Jan 17, 2023 by sashulkaSh
ResolvePackageNotFound: python=3.1
#63 opened Oct 19, 2022 by margaretwoodhouse
1
Using Portcullis on large Datasets in connection with Mikado
#62 opened Oct 13, 2022 by cc-prolix
Compilation error with python 3.10
#61 opened Aug 2, 2022 by dpryan79
Portcullis junc detects no junctions if bam index file already present in bam dir
#60 opened May 11, 2022 by OXB-DC
make fails
#59 opened Dec 2, 2021 by francicco
2
terminate called after throwing an instance of 'boost::wrapexcept<portcullis::bam::BamException>'
#58 opened Jul 7, 2021 by mezarque
autogen.sh autoreconf ERROR
#56 opened Jun 27, 2020 by francicco
1
Handling differences between short and long reads
#54 opened Jun 9, 2020 by LehmannN
4
could not open script file as a python file, any help with this error would be greatly appreciated. after brew install, portcullis full used
#53 opened Apr 20, 2020 by trjojack
missed junction
#52 opened Feb 3, 2020 by gorliver
more incorrect number of column errors bug
#51 opened Jan 29, 2020 by adamfreedman
@lucventurini
7
AttributeError: type object 'DataFrame' has no attribute 'from_csv' question
#50 opened Jan 6, 2020 by lijing28101
@lucventurini
9
portcullis::FileSystemError*
#49 opened Nov 4, 2019 by Xiaofei-git
6
Read counts
#48 opened Aug 17, 2019 by KMgoo
problem w/ python missing dependency in source installation bug question
#43 opened Apr 25, 2019 by rdauria
@lucventurini
3
Make portcullis work with long reads: ideas enhancement
#41 opened Mar 14, 2019 by lucventurini
@maplesond @lucventurini
12
[BUG] Brew installation now broken after the release of Python 3.7 bug
#35 opened Jul 3, 2018 by lucventurini
1
Ensure unique id after junctools set union enhancement
#29 opened Nov 6, 2017 by maplesond
Added sort / reindex and prefix options to junctools set enhancement
#28 opened Nov 6, 2017 by maplesond
Adapt initial positive set to sequencing depth and read length enhancement
#27 opened Nov 2, 2017 by maplesond
1
Define primary junctions enhancement
#20 opened Aug 17, 2016 by lucventurini
@maplesond @lucventurini
ProTip! Exclude everything labeled bug with -label:bug.