applying filters to individuals of variants

EGA-archive · Nov 19, 2024 · 8cf3d04 · 8cf3d04
1 parent 6688185
commit 8cf3d04
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diff --git a/beacon/connections/mongo/g_variants.py b/beacon/connections/mongo/g_variants.py
@@ -220,7 +220,7 @@ def get_individuals_of_variant(self, entry_id: Optional[str], qparams: RequestPa
         query_parameters={}# pragma: no cover
     else:
         query=query_parameters
-    query = apply_filters(self, query, qparams.query.filters, collection,query_parameters, dataset)
+    collection='individuals'
     HGVSIds = client.beacon.genomicVariations \
         .find(query, {"identifiers.genomicHGVSId": 1, "datasetId": 1, "_id": 0})
     HGVSIds=list(HGVSIds)

diff --git a/docker-compose.yml b/docker-compose.yml
@@ -78,6 +78,7 @@ services:
       MONGO_INITDB_DATABASE: beacon
     volumes:
       - ./beacon/connections/mongo/mongo-init/:/docker-entrypoint-initdb.d/:ro
+      - ./beacon/connections/mongo/data/:/data
     networks:
       - pub
     #command: --verbose