With contig alias 2 #118
Open
With contig alias 2 #118
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
and parsing the content. Added the necessary code to retrieve the fasta file related to a specific assembly. Parsing the file and saving related information alongside the Contig-alias Backend
- Retrieve the assembly report and the fasta file of a given accession - Parse the file and retrieve the assembly sequences - Hash the sequences and using md5 algorithm - Construct the level 2 sequence collection object - We can also use the function of the retrieval of the fasta file independently and save the sequences in a separate table
- Added the necessary entity to store the level 1 seqCol object - Aded the seqColdigest attribute in the chromosme table - Executed tests to store three minimal seqCol objects in this model We could not make the whole design because it requires a lot of time, but the minimal schema and idea exists and is implementd.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Completed the data-model using the contig alias data model