chore: Bump version to 1.0.19

EBISPOT · Apr 18, 2024 · 45865b0 · 45865b0
1 parent 726080a
commit 45865b0
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Showing 3 changed files with 8 additions and 15 deletions.
diff --git a/gwas_sumstats_tools/config.py b/gwas_sumstats_tools/config.py
@@ -19,15 +19,13 @@ def _env_variable_else(env_var_name: str, default: str) -> str:
     "GWAS_CAT_API_STUDIES_URL", "https://www.ebi.ac.uk/gwas/rest/api/studies/"
 )
 
-GWAS_CAT_API_INGEST_STUDIES_URL = _env_variable_else(
-    "GWAS_CAT_API_INGEST_STUDIES_URL",
+URL_API_INGEST = _env_variable_else(
+    "URL_API_INGEST",
     "https://www.ebi.ac.uk/gwas/ingest/api/v2/studies/",
+    # if sandbox, then use
+    # "https://wwwdev.ebi.ac.uk/gwas/ingest/api/v2/studies/",
 )
 
-GWAS_CAT_API_INGEST_STUDIES_URL_SANDBOX = _env_variable_else(
-    "GWAS_CAT_API_INGEST_STUDIES_URL_SANDBOX",
-    "https://wwwdev.ebi.ac.uk/gwas/ingest/api/v2/studies/",
-)
 
 GWAS_CAT_STUDY_MAPPINGS = {
     "genotyping_technology": "genotyping_technology",

diff --git a/gwas_sumstats_tools/interfaces/metadata.py b/gwas_sumstats_tools/interfaces/metadata.py
@@ -7,8 +7,7 @@
 
 from pydantic import ValidationError
 from gwas_sumstats_tools.config import (GWAS_CAT_API_STUDIES_URL,
-                                        GWAS_CAT_API_INGEST_STUDIES_URL,
-                                        GWAS_CAT_API_INGEST_STUDIES_URL_SANDBOX,
+                                        URL_API_INGEST,
                                         GWAS_CAT_STUDY_MAPPINGS,
                                         REST_GWAS_CAT_STUDY_MAPPINGS,
                                         STUDY_FIELD_TO_SPLIT,
@@ -131,7 +130,6 @@ def comment_token(s, mark):
 def metadata_dict_from_gwas_cat(
     accession_id: str, 
     is_bypass_rest_api: bool = False, 
-    is_sandbox: bool = False,
 ) -> dict:
     """Extract metadat from the GWAS Catalog API
 
@@ -140,19 +138,16 @@ def metadata_dict_from_gwas_cat(
         is_bypass_rest_api(bool, optional): A flag indicating whether the request comes from the sumstats
             service. If True, the function bypasses querying the REST API for additional study metadata.
             Defaults to False, which means the REST API response will be included in the metadata dict.
-        is_sandbox(bool, optional): A A flag indicating whether the request comes from the sandbox sumstats
-            service.
 
     Returns:
         Metadata dict
     """
     meta_dict = {}
     sample_list = []
     ### DEV ONLY ###### 
-    # if is_sandbox:
-    #     study_url = GWAS_CAT_API_INGEST_STUDIES_URL_SANDBOX + accession_id
+    # if sandbox, then update URL_API_INGEST in config
     ###################
-    study_url = GWAS_CAT_API_INGEST_STUDIES_URL + accession_id
+    study_url = URL_API_INGEST + accession_id
     sample_url = study_url + "/samples"
     rest_url = GWAS_CAT_API_STUDIES_URL + accession_id
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "gwas-sumstats-tools"
-version = "1.0.18"
+version = "1.0.19"
 description = ""
 authors = ["jdhayhurst <[email protected]>"]
 readme = "README.md"