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genome_uploader restructure

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@Ge94 Ge94 released this 25 Apr 12:46
· 37 commits to main since this release
07361ac
  • Restructured the whole project
  • Added a testing environment and an e2e test
  • Improved the ENA API querying logic
  • Fixed failures for missing taxonomic assignments and Eukaryotes
  • Improved metadata quality checks and filters from ENA samples
  • Handling of config files for credentials and env variables