Overview

This is a set of functions and scripts for analyzing microbial amplicon data written by members of the Denef lab

Contents

R scripts are all contained within the R directory

mothur2oligo provides scripts for navigating from mothur output to the Oligotyping pipeline

• see http://merenlab.org/projects/oligotyping/

Demos

You can access demos at: http://deneflab.github.io/MicrobeMiseq