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Bug in overriding coordination_dir in toil/common.py #5152

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gmloose opened this issue Nov 12, 2024 · 1 comment · May be fixed by #5153

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gmloose commented Nov 12, 2024 •

edited by unito-bot

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The location of the coordination directory can be overridden by setting the environment variable TOIL_COORDINATION_DIR_OVERRIDE. However, the line where the setting should be applied, https://github.com/DataBiosphere/toil/blob/f71dc86c57680e9dfa78e7d283747dfbc04eb362/src/toil/common.py#L429C1-L429C71, does not assign its value to self.coordination_dir but to self.workDir. Also the comment two lines above this statement is wrong.

┆Issue is synchronized with this Jira Story
┆Issue Number: TOIL-1668

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Contributor Author

gmloose commented Nov 12, 2024

Fixed by #5153

stxue1 linked a pull request

that will close this issue

Fix bug in override of coordination directory #5153

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