Merge pull request #35 from DNAstack/develop

v1.0.0

README.md

@@ -15,7 +15,7 @@ If any step of the action fails, the check will fail; however if some task tests
 # GitHub action usage
 
 ```yaml
-- uses: dnastack/wdl-ci@v0.2.0
+- uses: dnastack/wdl-ci@v1.0.0
   with:
     # Configuration file where tests can be found
     # Default: wdl-ci.config.json
@@ -86,7 +86,7 @@ jobs:
         with:
           submodules: true
       - name: wdl-ci
-        uses: dnastack/wdl-ci@v0.2.0
+        uses: dnastack/wdl-ci@v1.0.0
         with:
           wallet-url: ${{ secrets.WALLET_URL }}
           wallet-client-id: ${{ secrets.WALLET_CLIENT_ID }}
@@ -114,7 +114,7 @@ jobs:
           repository: ${{ github.event.pull_request.head.repo.full_name }}
           ref: ${{ github.event.pull_request.head.ref }}
       - name: wdl-ci
-        uses: dnastack/wdl-ci@v0.2.0
+        uses: dnastack/wdl-ci@v1.0.0
         with:
           wallet-url: ${{ secrets.WALLET_URL }}
           wallet-client-id: ${{ secrets.WALLET_CLIENT_ID }}
@@ -144,7 +144,7 @@ jobs:
           repository: ${{ github.event.pull_request.head.repo.full_name }}
           ref: ${{ github.event.pull_request.head.ref }}
       - name: wdl-ci
-        uses: dnastack/wdl-ci@v0.2.0
+        uses: dnastack/wdl-ci@v1.0.0
         with:
           wallet-url: ${{ secrets.WALLET_URL }}
           wallet-client-id: ${{ secrets.WALLET_CLIENT_ID }}

action.yml

@@ -50,19 +50,19 @@ runs:
           echo "WDL_CI_CUSTOM_TEST_WDL_DIR"=${{ inputs.wdl_ci_custom_test_wdl_dir }} >> $GITHUB_ENV
         fi
     - name: lint
-      uses: docker://dnastack/wdl-ci:v0.2.0
+      uses: docker://dnastack/wdl-ci:v1.0.0
       with:
         args: lint
     - name: detect-changes
-      uses: docker://dnastack/wdl-ci:v0.2.0
+      uses: docker://dnastack/wdl-ci:v1.0.0
       with:
         args: detect-changes
     - name: submit
-      uses: docker://dnastack/wdl-ci:v0.2.0
+      uses: docker://dnastack/wdl-ci:v1.0.0
       with:
         args: submit
     - name: monitor
-      uses: docker://dnastack/wdl-ci:v0.2.0
+      uses: docker://dnastack/wdl-ci:v1.0.0
       with:
         args: monitor --update-digests
       # If a test fails, still update task digests for any tests that succeeded
@@ -76,6 +76,6 @@ runs:
         default_author: github_actions
     - name: cleanup
       if: always()
-      uses: docker://dnastack/wdl-ci:v0.2.0
+      uses: docker://dnastack/wdl-ci:v1.0.0
       with:
         args: cleanup

pyproject.toml

@@ -1,7 +1,7 @@
 [project]
 name = "wdl-testing-cli"
 description = "DNAstack WDL testing CLI"
-version = "v0.2.0"
+version = "1.0.0"
 authors = [
     { name = "DNAstack", email = "[email protected]" }
 ]

src/wdlci/auth/refresh_token_auth.py

@@ -2,7 +2,7 @@
 import datetime
 import requests
 from wdlci.config import Config
-from wdlci.exception.wdl_test_cli_exit_exception import WdlTestCliException
+from wdlci.exception.wdl_test_cli_exit_exception import WdlTestCliExitException
 
 
 class RefreshTokenAuth(object):
@@ -46,7 +46,7 @@ def __obtain_access_token(self):
 
         response = requests.post(url, params=params, headers=headers)
         if response.status_code != 200:
-            raise WdlTestCliException(
+            raise WdlTestCliExitException(
                 "could not obtain access token from refresh token", 1
             )
 

src/wdlci/workbench/ewes_client.py

@@ -34,7 +34,7 @@ def submit_workflow_run(self, workflow_run):
         }
 
         form_data = {
-            "workflow_url": f"{env.workbench_workflow_service_url}/{env.workbench_namespace}/workflows/{workflow_run._workflow_id}/versions/v1_0_0/descriptor",
+            "workflow_url": workflow_run._workflow_id,
             "workflow_type": "WDL",
             "workflow_type_version": "1.0",
             "workflow_params": {**workflow_run._inputs, **output_test_task_params},